|
Characteristics of the core PIF/Harbinger-like elements of M. truncatula |
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| Element |
GenBank sequence no. |
Position (first base-last base) |
Element length |
TPase/orf1 orientation |
No. of introns in TPase |
|
|
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| MtPH-A5-Ia |
AC132565 |
126754–132718 |
5965 bp |
TP > orf1 |
2 |
| MtPH-A6-1-Ia |
AC151598 |
118204–122278 |
4075 bp |
TP > orf1 |
2 |
| MtPH-A6-2-Ia |
AC122722 |
63283–67500 |
4218 bp |
TP > orf1 |
2 |
| MtPH-A6-3-Ia |
AC144563 |
2339–7183 (-)* |
4845 bp |
TP > orf1 |
2 |
| MtPH-A6-4-Ia |
AC146704 |
67498–72196 |
4699 bp |
TP > orf1 |
1 |
| MtPH-D-Ia |
AC135566 |
96556–99715 (-) |
3160 bp |
TP > orf1 |
1 |
| MtPH-E-Ia |
AC135606 |
48232–52188 |
3957 bp |
no orf1 |
2 |
| MtPH-E-IIa |
AC139748 |
47216–50597 |
3382 bp |
no orf1 |
2 |
| MtPH-M-1-Ia (MtMaster) |
AC144478 |
46234–51373 |
5140 bp |
orf1 > TP |
1 |
| MtPH-M-1-IIa |
AC146861 |
104340–109602 (-) |
5006 bp |
orf1 > TP |
1 |
| MtPH-M-2-Ia |
AC160098 |
52670–58188 |
5519 bp |
orf1 > TP |
2 |
| MtPH-M-2-IIa |
AC149306 |
56522–61824 |
5303 bp |
orf1 > TP |
2 |
| MtPH-M-3-Ia |
CR962122 |
73712–77759 |
4048 bp |
orf1 > TP |
1 |
|
* (-) indicates that the sequence of the TE is reverse complement of the original BAC sequence | |||||
Grzebelus et al. BMC Genomics 2007 8:409 doi:10.1186/1471-2164-8-409 |
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