Table 2 |
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|
Putative TCS gene clusters in the genomes of P. syringae pv. syringae B728a, pv. tomato DC3000 and pv. phaseolicola 1448A. |
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|
Histidine kinase/Response regulator |
Protein namea |
Organizationb |
HK type |
RR type |
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|
|
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|
Psy B728a |
Pto DC3000 |
Pph 1448A |
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|
|
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|
PSYR0064/0063 |
PSPTO0126/0127 |
PSPPH0070/0069 |
FimS/AlgR |
HR |
LytS-like |
LytR-like |
|
PSYR0259/0258 |
PSPTO0329/0328 |
PSPPH0247/0246 |
EnvZ/OmpR |
RH |
IA |
OmpR-like |
|
PSYR0264/0263 |
PSPTO0335/0334 |
PSPPH0253/0252 |
--/AlgB |
RH |
IA |
NtrC-like |
|
PSYR0723/0722 |
PSPTO0824/0823 |
PSPPH0737/0736 |
PilS/PilR |
RH |
IC |
NtrC-like |
|
PSYR0786/0788 |
PSPTO0913/0915 |
PSPPH0805/0807 |
CheA1/CheY1 |
RHc |
CheA-like |
Stand-alone REC |
|
PSYR0832/0831 |
PSPTO0965/0964 |
PSPPH0858/0857 |
--/-- |
HR |
IC |
NtrC-like |
|
PSYR1100/1099 |
--/-- |
PSPPH1168/1167 |
--/-- |
RHd |
IB |
PleD-like |
|
PSYR1112/1111 |
PSPTO1291/1290 |
PSPPH1180/1179 |
--/GltR |
RH |
IA |
OmpR-like |
|
PSYR1126/1127 |
PSPTO1306/1307 |
PSPPH1194/1195 |
--/-- |
RH |
IA |
OmpR-like |
|
PSYR1498/1497 |
--/-- |
--/-- |
CopS/CopR |
RH |
IA |
OmpR-like |
|
PSYR1941/1940 |
PSPTO2131/2130 |
PSPPH1907/1906 |
--/-- |
HR |
III |
NarL-like |
|
PSYR2031/2032 |
PSPTO2222/2223 |
PSPPH2003/2004 |
RhpS/RhpR |
RH |
IA |
OmpR-like |
|
PSYR2050/2051 |
PSPTO2245/2246 |
PSPPH2021/2022 |
KdpD/KdpE |
HR |
IA |
OmpR-like |
|
PSYR2374/2375 |
PSPTO2642/2643 |
PSPPH2510/--e |
--/-- |
RH |
IA |
OmpR-like |
|
PSYR2385/2384 |
PSPTO2652/2651 |
--/-- |
BphP2/-- |
HR |
GAF-HK |
Stand-alone REC |
|
PSYR2867/2868 |
PSPTO2983/--e |
PSPPH2377/2376 |
BaeS2/BaeS1 |
HR |
IA |
OmpR-like |
|
PSYR3085/3084 |
--/-- |
PSPPH2980/--e |
--/-- |
RH |
IA |
OmpR-like |
|
PSYR3128/3127 |
PSPTO3298/3297 |
PSPPH3041/3040 |
--/-- |
RH |
IA |
OmpR-like |
|
PSYR3211/3212 |
PSPTO3380/3381 |
PSPPH3126/3127 |
--/-- |
RH |
IA |
OmpR-like |
|
PSYR3375/3374 |
PSPTO3604/3603 |
PSPPH3295/3294 |
--/-- |
RH |
IA |
OmpR-like |
|
PSYR3434/3436 |
PSPTO1982/1980 |
PSPPH3360/3362 |
CheA2/CheY2 |
RHc |
CheA-like |
Stand-alone REC |
|
PSYR3460/3459 |
PSPTO1955/1956 |
PSPPH3386/3385 |
FleS/FleR |
HR |
IC |
NtrC-like |
|
PSYR3512/3511 |
PSPTO1893/1894 |
PSPPH3454/3453 |
QseC/QseB |
RH |
IA |
OmpR-like |
|
PSYR3708/3709 |
PSPTO1680/1679 |
PSPPH3729/3730 |
PhoQ/PhoP |
RH |
IA |
OmpR-like |
|
PSYR3715/3716 |
PSPTO1673/1672 |
PSPPH3736/3737 |
--/RstA |
RH |
IA |
OmpR-like |
|
PSYR3792/3793 |
--/-- |
PSPPH1461/1460 |
--/CpxR |
RH |
IA |
OmpR-like |
|
PSYR3912/3913 |
PSPTO4175/4176 |
PSPPH3906/3907 |
--/-- |
HR |
IC |
NtrC-like |
|
PSYR3964/3965 |
PSPTO4230/4231 |
PSPPH3961/3962 |
TctE/TctD |
RH |
IA |
OmpR-like |
|
PSYR3994/3995 |
PSPTO4291/4292 |
PSPPH4001/4002 |
--/-- |
HR |
IC |
NtrC-like |
|
PSYR4069/4070 |
PSPTO4373/4374 |
PSPPH4074/4075 |
ColS/ColR |
RH |
IA |
OmpR-like |
|
PSYR4231/4230 |
PSPTO4554/4553 |
PSPPH4256/4255 |
--/-- |
HR |
IC |
PrrA-like |
|
PSYR4619/4618 |
PSPTO0559/0560 |
PSPPH0641/0642 |
--/-- |
HR |
III |
NarL-like |
|
PSYR4799/4800 |
PSPTO0379/0378 |
PSPPH4827/4828 |
--/-- |
RH |
IA |
OmpR-like |
|
PSYR4821/4822 |
PSPTO0353/0352 |
PSPPH4852/4853 |
NtrB/NtrC |
HR |
IC |
NtrC-like |
|
PSYR4937/4938 |
PSPTO5398/5399 |
PSPPH0147/0146 |
--/-- |
HR |
IC |
NtrC-like |
|
PSYR5033/5032 |
PSPTO5478/5477 |
PSPPH5115/5114 |
PhoR/PhoB |
RH |
IA |
OmpR-like |
|
PSYR5089/5088 |
PSPTO5549/5548 |
PSPPH5172/5171 |
--/-- |
HR |
IC |
LytR-like |
|
--/-- |
PSPTO0785/0786 |
--/-- |
--/-- |
HR |
IA |
OmpR-like |
|
--/-- |
PSPTO4705/4704 |
--/-- |
CorS/CorR |
RH |
IB |
NarL-like |
|
--/-- |
PSPTO5573/5574e |
--/-- |
--/-- |
HR |
IC |
OmpR-like |
|
|
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|
a Whenever a HK or RR of P. syringae has been assigned a function in the literature and/or an annotation in databases, the corresponding protein name is mentioned; borganization of each TCS on P. syringae genomes (HR, 5' histidine kinase-3' response regulator; RH, 5' response regulator-3' histidine kinase); c an additional gene is located in between the RR and HK genes; d HR in P. syringae pv. phaseolicola 1448A; e genes with disrupted reading frames. |
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|
Lavín et al. BMC Genomics 2007 8:397 doi:10.1186/1471-2164-8-397 |
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