|
Top 15 genes identified by ratio from the array dataset |
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| UG cluster ID |
SwissProt Accession |
Gene name |
MFS NI |
UC NI |
Ratio MFS/UC |
q-value |
|
|
||||||
| Hs.146688 |
PTGES:O14684 |
Prostaglandin E synthase |
185 |
108 |
1.71 |
1.36E-03 |
| Hs.90303 |
TSC2:P49815 |
Tuberous sclerosis 2 |
60 |
37 |
1.64 |
1.26E-04 |
| Hs.1872 |
PCK1:P35558 |
Phosphoenolpyruvate carboxykinase 1 |
249 |
157 |
1.59 |
4.11E-03 |
| Hs.310545 |
SYT1:P21579 |
Synaptotagmin I |
109 |
69 |
1.57 |
2.60E-03 |
| Hs.144700 |
EFNB1:P98172 |
Ephrin-B1 |
296 |
191 |
1.56 |
4.84E-03 |
| Hs.334534 |
GNS:P15586 |
Glucosamine (N-acetyl)-6-sulfatase |
173 |
112 |
1.54 |
5.23E-05 |
| Hs.386283 |
ADAM12:O43184 |
Meltrin L |
44 |
73 |
1.65-1 |
5.08E-09 |
| Hs.516646 |
CREB1:P16220 |
CAMP responsive element BP 1 |
193 |
339 |
1.76-1 |
1.96E-05 |
| Hs.489142 |
COL1A2:P08123 |
Collagen, type I, alpha 2 |
3663 |
6582 |
1.80-1 |
4.48E-06 |
| Hs.146447 |
FBN1:P35555 |
Fibrillin 1 |
124 |
233 |
1.89-1 |
2.52E-10 |
| Hs.250581 |
SMARCD2:Q92925 |
SWI/SNF D2 |
1532 |
2963 |
1.93-1 |
5.99E-06 |
| Hs.432862 |
MARCH-VI:O60337 |
RING-CH protein VI |
2091 |
4245 |
2.03-1 |
4.97E-09 |
| Hs.55967 |
SHOX2:O60902 |
Short stature homeobox 2 |
58 |
137 |
2.38-1 |
1.13E-12 |
| Hs.443625 |
COL3A1:P02461 |
Collagen, type III, alpha 1 |
638 |
1538 |
2.41-1 |
2.06E-04 |
| Hs.252418 |
ELN:P15502 |
Elastin |
35 |
117 |
3.34-1 |
2.19E-08 |
|
Unigene ID identifies significant, differentially expressed genes based on expression ratio criteria. The top 6 down regulated and 9 up regulated genes are included. The normalized intensity (NI) from the phosphorimager scan is listed to give a sense of the expression range. The q values are computed based on t test p values. In this and subsequent tables, we show all ratios less than 1 as reciprocals. The entire 4132 gene list has been deposited into GEO (the Gene Expression Omnibus), accession number GSE8759. | ||||||
Yao et al. BMC Genomics 2007 8:319 doi:10.1186/1471-2164-8-319 |
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