|
List of distinctive 70 genes between types A and B 3 |
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| ID |
Symbol |
Cytoband |
Name |
type A |
type B3 |
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|
|
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| gain |
loss |
gain |
loss |
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|
|
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| AA186327 |
SNX14 |
6q14-q15 |
sorting nexin 14 |
(5/8) |
|||
| AA458945 |
RAB30 |
11q12-q14 |
RAB30, member RAS oncogene family |
(5/6) |
(4/8) |
||
| AI201652 |
EST |
(4/6) |
(1/8) |
(3/8) |
|||
| AI337344 |
HSRG1 |
16q23.1 |
HSV-1 stimulation-related gene 1 |
(6/6) |
(3/8) |
(1/8) |
|
| AA991868 |
EST |
(6/6) |
(3/8) |
(2/8) |
|||
| AA465687 |
HCC-4 |
2q24.2 |
cervical cancer oncogene 4 |
(6/6) |
(2/8) |
(4/8) |
|
| AI493835 |
ESTs |
(6/6) |
(2/8) |
(1/8) |
|||
| AW087220 |
ESTs |
(4/6) |
|||||
| AA478436 |
SMARCD2 |
17q23-q24 |
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 |
(6/6) |
(2/8) |
||
| AI015542 |
TG737 |
13q12.1 |
Probe hTg737 |
(5/6) |
(2/8) |
||
| AI733279 |
ESTs |
(6/6) |
(2/8) |
(4/8) |
|||
| AA973681 |
ESTs |
(3/6) |
|||||
| N93021 |
TBCA |
5q14.1 |
(5/8) |
||||
| AA917489 |
ESTs |
(6/6) |
|||||
| AA775364 |
RPL30 |
8q22 |
ribosomal protein L30 |
(1/6) |
|||
| AA987488 |
ESTs |
(2/6) |
(2/8) |
||||
| AA478585 |
BTN3A3 |
6p22.1 |
butyrophilin, subfamily 3, member A3 |
(1/6) |
(2/8) |
||
| AI291184 |
OCLN |
5q13.1 |
occludin |
(5/6) |
(2/8) |
||
| AI348521 |
HBS1L |
6q23-q24 |
HBS1-like |
(6/8) |
|||
| AA287917 |
TNPO1 |
5q13.2 |
karyopherin (importin) beta 2 |
(2/6) |
(2/8) |
||
| AA885609 |
MAP1A |
15q13-qter |
microtubule-associated protein 1A |
(8/8) |
|||
| AI375415 |
ESTs |
(2/8) |
|||||
| AA489670 |
ESTs |
(3/8) |
|||||
| AI972677 |
MSMB |
10q11.2 |
microseminoprotein, beta- |
(1/6) |
(1/6) |
||
| N71628 |
SPIB |
19q13.3-q13.4 |
Spi-B transcription factor (Spi-1/PU.1 related) |
(3/5) |
(1/6) |
||
| AI383789 |
ESTs |
||||||
| AI261862 |
ESTs |
(2/6) |
(3/8) |
||||
| AI985214 |
TFPI |
2q31-q32.1 |
tissue factor pathway |
(2/6) |
|||
| H17513 |
HSPA1L |
6p21.3 |
heat shock 70kDa protein 1-like |
(2/8) |
|||
| T61428 |
NEDD9 |
6p25-p24 |
neural precursor cell expressed, developmentally down-regulated 9 |
(2/6) |
(2/8) |
||
| N90109 |
NCL |
2q12-qter |
nucleolin |
(3/6) |
(1/8) |
||
| AI972568 |
RPL36A |
Xq22.1 |
ribosomal protein L36a |
(3/6) |
|||
| AA442092 |
CTNNB1 |
3p21 |
catenin, beta 1, 88 kDa |
(1/8) |
|||
| AA902196 |
ESTs |
(2/6) |
(1/8) |
||||
| AW009090 |
NDUFB3 |
2q31.3 |
NADH dehydrogenase 1 beta subcomplex, 3, 12 kDa |
(1/8) |
|||
| AA975250 |
MAT2B |
5q34-q35.1 |
methionine adenosyltransferase II, beta |
(3/8) |
|||
| AI281237 |
C13orf12 |
13q12.3 |
chromosome 13 open reading frame 12 |
(3/8) |
|||
| H51066 |
OBRGRP |
1p31.3 |
leptin receptor gene-related protein |
(2/8) |
|||
| AA465386 |
DDX21 |
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 |
(3/8) |
||||
| AI951501 |
RPL12 |
9q34 |
ribosomal protein L12 |
(6/6) |
(1/8) |
||
| AW075424 |
SFRS3 |
6p21 |
splicing factor, arginine/serine-rich 3 |
(6/6) |
(1/8) |
||
| AI086414 |
EST |
(2/8) |
|||||
| AI279626 |
EST |
(2/8) |
|||||
| AA677257 |
TPMT |
6p22.3 |
thiopurine S-methyltransferase |
(6/8) |
|||
| AA887201 |
C13orf1 |
13q14 |
chromosome 13 open reading frame 1 |
(1/8) |
|||
| AI284218 |
ESTs |
(2/6) |
(1/8) |
||||
| AA991871 |
FOXA1 |
14q12-q13 |
forkhead box A1 |
(3/6) |
|||
| AA864434 |
ESTs |
(4/6) |
(1/8) |
(1/8) |
|||
| AI318162 |
FLJ14936 |
1p33-p32.1 |
hypothetical protein FLJ14936 |
(1/8) |
|||
| AA504351 |
ZNF146 |
zinc finger protein 146 |
(1/6) |
(6/8) |
|||
| AI302566 |
ESTs |
(3/6) |
(1/8) |
||||
| AI311303 |
ESTs |
(3/8) |
|||||
| AW078798 |
UBB |
17p12-p11.2 |
ubiquitin B |
(6/6) |
(2/6) |
||
| AA927666 |
ARCH |
1p35.1 |
archease |
(3/6) |
(1/8) |
||
| AA426027 |
SNX3 |
6q21 |
sorting nexin 3 |
(3/6) |
(6/8) |
||
| AI262055 |
ESTs |
(1/8) |
|||||
| AA936514 |
C6orf10 |
6p21.3 |
chromosome 6 open reading frame 10 |
(1/6) |
(6/8) |
||
| AI364310 |
ESTs |
(5/6) |
|||||
| AA504141 |
UBE2J1 |
6q15 |
ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) |
(1/8) |
|||
| AA130187 |
WT1 |
11p13 |
Wilms tumor 1 |
(1/6) |
|||
| N56693 |
COX7B |
Xq21.1 |
cytochrome c oxidase subunit VIIb |
(5/6) |
(1/8) |
||
| AA401441 |
BF |
6p21.3 |
B-factor, properdin |
(1/8) |
|||
| AA917821 |
MRPS30 |
5q11 |
mitochondrial ribosomal protein S30 |
(1/6) |
|||
| AI431827 |
ESTs |
(4/8) |
|||||
| AA935697 |
ESTs |
(3/8) |
|||||
| AI248605 |
BTN3A2 |
6p22.1 |
butyrophilin, subfamily 3, member A2 |
(7/8) |
|||
| AI206970 |
ESTs |
||||||
| AW058415 |
HBXIP |
1p13.3 |
hepatitis B virus × interacting protein |
(2/6) |
|||
| N69107 |
YWHAH |
22q12.3 |
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide |
(1/6) |
|||
| AA863025 |
ESTs |
(2/6) |
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|
The ID indicate GeneBank ID and the symbol and the cytoband information are from their SOURCE http://source.stanford.edu. The incidence is the number oh cases having log2 ratio in the range of our criteria ± 0.3. ESTs are expressed sequenced tags, clones of unknown functions. Genes are listed according to order FDR values. | |||||||
Lee et al. BMC Genomics 2007 8:305 doi:10.1186/1471-2164-8-305 |
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