|
Average expression ratios (DS samples/controls) calculated from microarray and RT-PCR data and Pearson correlation coefficient (r) between microarray and RT-PCR data. Hsa21 genes are in bold. |
||||||||
| Functional Category |
Probe ID |
Gene Name |
GenBank |
Micro-array Fold change |
Micro-array p-value |
RT-PCR ratio |
r |
Primers for RT-PCR |
|
|
||||||||
| Oxydative Phospho-rylation |
201226_at |
NDUFB8 |
NM_005004 |
0.65 |
0.0160 |
0.76 |
0.78 |
LEFT-GCCAAGAAGTATAATATGCGTGTG RIGHT-GTCAGGGAGCTTCGGGTAG |
| 201740_at |
NDUFS3 |
NM_004551 |
0.76 |
0.0294 |
0.60 |
0.88 |
LEFT-GATTATGGCTTCGAGGGACA RIGHT-ACCCGCTTCACTTCATCATC |
|
| 201903_at |
UQCRC1 |
NM_003365 |
0.77 |
0.0142 |
0.89 |
0.84 |
LEFT-CCGAGCAGTCCTCTCAGC RIGHT-TGTTCCCTTGAAAGCCAGAT |
|
| 201966_at |
NDUFS2 |
NM_004550 |
0.67 |
0.0010 |
0.58 |
0.89 |
LEFT-GAATGGGCACAGCAGTTTG RIGHT-GGCCCAAAGTTCAGGGTAAT |
|
| 203606_at |
NDUFS6 |
NM_004553 |
0.75 |
0.0464 |
0.63 |
0.84 |
LEFT-AGAAGGTCACGCACACTGG RIGHT-CACGGGCTGCTCTGCTAT |
|
| 203663_s_at |
COX5A |
NM_004255 |
0.79 |
0.0400 |
1.04 |
0.79 |
LEFT-AACTGGGCCTTGACAAAGTG RIGHT-GGTAACTGTTCACACTCAAGTAGCA |
|
| 203858_s_at |
COX10 |
NM_001303 |
0.77 |
0.0101 |
0.66 |
0.92 |
LEFT-CTTTTGACTGGCCCTGTTTC RIGHT-ACCAGCGGTCTGTTCTTTGT |
|
| 218160_at |
NDUFA8 |
NM_014222 |
0.73 |
0.0445 |
0.71 |
0.94 |
LEFT-GTCATGCCGGGGATAGTG RIGHT-TTAAGCACAGCAGAACTAATTTTCA |
|
| 218190_s_at |
UCRC |
NM_013387 |
0.76 |
0.0017 |
0.76 |
0.89 |
LEFT-GACGCTATCTACGACCACATCA RIGHT-GGTCCTTCTGGCCTGGAT |
|
|
|
||||||||
| Extra-cellular Matrix |
201069_at |
MMP2 |
NM_004530 |
1.59 |
0.0069 |
1.89 |
0.93 |
LEFT-TCCACCACCTACAACTTTGAGA RIGHT-AACTTGCAGGGCTGTCCTT |
| 202310_s_at |
COL1A1 |
K01228 |
1.55 |
0.0333 |
5.86 |
0.90 |
LEFT-TGTTCAGCTTTGTGGACCTC RIGHT-CTGTACGCAGGTGATTGGTG |
|
| 202403_s_at |
COL1A2 |
NM_000089 |
1.60 |
0.0192 |
3.59 |
0.77 |
LEFT-CACATGCCGTGACTTGAGAC RIGHT-TAGCATCCATAGTGCATCCTTG |
|
| 202994_s_at |
FBLN1 |
Z95331 |
1.72 |
0.0271 |
2.38 |
0.89 |
LEFT-GCCACAAGTGCGAGAACAC RIGHT-TAGACGTTGGCACACTCCTG |
|
| 209081_s_at |
COL18A1 |
AF018081 |
1.57 |
0.0079 |
1.91 |
0.95 |
LEFT-GTGGCCCTCTACGTGGACT RIGHT-TCTGAGTCATCGCCTTCCTC |
|
| 213428_s_at |
COL6A1 |
AA292373 |
1.62 |
0.0493 |
2.20 |
0.78 |
LEFT-AGGAGACCCTGGTGAAGCTG RIGHT-AGGTCCTGGGGCTCCTCT |
|
| 209156_s_at |
COL6A2 |
AY029208 |
2.39 |
0.0002 |
2.18 |
0.79 |
LEFT-GACCTGGTCGCTGAGAAGTT RIGHT-GCCTTGTGGAAGTTCTGCTC |
|
|
|
||||||||
| Other genes |
205548_s_at |
BTG3 |
NM006806 |
1.68 |
0.0134 |
1.62 |
0.83 |
LEFT-GAGGCAGTTGAGAGGTTTGC RIGHT-GAGTGAGCTCCTTTGGCAAG |
| 35776_at |
ITSN1 |
AF064243 |
1.72 |
0.0003 |
1.57 |
0.88 |
LEFT-GTGAGCGGCACTGATTTGT RIGHT-GATCATGCTTCGCTCTTTCC |
|
| 205593_s_at |
PDE9A |
NM_002606 |
2.05 |
0.0067 |
2.05 |
0.89 |
LEFT-CAGAACGCACTCCGTACAAA RIGHT-TGGGCTCTACCTGTCCACTT |
|
| 211065_x_at |
PFKL |
BC006422 |
1.42 |
0.0088 |
1.97 |
0.81 |
LEFT-GGTGGACCTGGAGAAGCTG RIGHT-TCCAGGCGGAGTCAATGT |
|
| 200642_at |
SOD1 |
NM_000454 |
1.16 |
>0.05 |
0.65 |
0.83 |
LEFT-GCATCATCAATTTCGAGCAG RIGHT-CAGCCTCTGTATTATCTCCAA |
|
| 203405_at |
DSCR2 |
NM_003720 |
1.15 |
>0.05 |
0.85 |
0.78 |
LEFT-AAAGACTCGGCGTGTTGTC RIGHT-GAATTGCTGGGATTTTCCAT |
|
| 202671_s_at |
PDXK |
NM_003681 |
1.12 |
>0.05 |
1.00 |
0.98 |
LEFT-CATACAGAGCCACGTCATCC RIGHT-GCATAGCCTGTGTGGTTTGA |
|
| 202325_s_at |
ATP5J |
NM_001685 |
1.00 |
>0.05 |
1.17 |
0.78 |
LEFT-TGTTTGGCTTCTGTCTCACC RIGHT-GGCTGACCGAATGACAGAG |
|
| 202749_at |
WRB |
NM_004627 |
1.17 |
>0.05 |
1.25 |
0.85 |
LEFT-CTCAGCTTCGTGTTTGGATG RIGHT-ACTGTGGAGAGCTCCTGCTT |
|
| 209033_s_at |
DYRK1A |
D86550 |
1.53 |
0.0001 |
1.71 |
0.84 |
LEFT-GATATCATATGGGTCAGGTCATTTT RIGHT-CTGGACTGTAACATAACACAGTATGC |
|
| 208370_s_at |
DSCR1 |
NM_004414 |
1.25 |
>0.05 |
4.35 |
0.83 |
LEFT-TTTGCTCAGACCTTACACATAGGA RIGHT-GGGAGGGGAGATCAGAAACT |
|
| 210555_s_at |
NFATC3 |
U85430 |
0.45 |
>0.05 |
0.54 |
0.97 |
LEFT-CTTTGCAATGGCAAGAGGA RIGHT-GATGAGGCACAGGCAAAGAT |
|
| 217526_at |
NFATC2 |
AI478300 |
0.77 |
0.019 |
0.67 |
0.84 |
LEFT-GAGTTCACATCCCAGAGTCCA RIGHT-GAGCACTCGATGGGGTTAGA |
|
Conti et al. BMC Genomics 2007 8:268 doi:10.1186/1471-2164-8-268 |
||||||||