Table 2

Descriptive breakdown of HapMap CEU SNP data across the 1q43 7.0 Mb region


All annotated SNPs (Build 35) Chr1: 233515650-240494277
CEU population: genotyped SNPs (8-way comparison)

Total SNPs
28243
11076*
exonic SNPs
208
74
     MCS-SNPs
130
47
          Polymorphic
NA
23 (MAF = 0.20)
          Monomorphic
NA
24
     non-MCS-SNPs
78
27
          Polymorphic
NA
22 (MAF = 0.27)
          Monomorphic
NA
5
non-exonic SNPs
28035
11002
     MCS-SNPs
776
414
          Polymorphic
NA
259 (MAF = 0.22)
          Monomorphic
NA
155
     non-MCS-SNPs
27259
10587
          Polymorphic
NA
7241 (MAF = 0.23)
          Monomorphic
NA
3346

McCauley et al. BMC Genomics 2007 8:266   doi:10.1186/1471-2164-8-266