Table 1

Distribution of tandem repeats (> 15 bp with 80% identity between copies) in four legume plastomes

Initial position

Final position

Size (≥ 15 bp)

Copies

Identity (≥ 80%)

Position related genes


Phaseolus

66513

66572

15

4

80

psaJ/rpl33

65733

65783

17

3

92.2

trnW/trnP

80116

80179

16

4

98

rps8/rps19, or rps3/rps19

85700

85762

21

3

88.9

ycf2

88119

88172

18

3

88.9

ycf2

Lotus

1694

1765

24

3

81.9

psbA/trnK

14487

14543

19

3

84.2

trnL/trnT

17838

17888

17

3

86.3

ycf3, intron

24441

24492

26

2

100

trnG/ycf9

47831

47878

16

3

96

atpH/atpF

54191

54265

25

3

80

psbK/trnQ

87031

87093

21

3

91

ycf2

89444

89524

27

3

95

ycf2

106513

106572

20

3

83.3

trnN/ycf1

109580

109642

21

3

84.1

ndhF/rpl32

Glycine

28572

28640

23

3

81.2

psbD/trnT

51493

51555

21

3

84.1

atpA/trnR

51753

51818

22

3

86.4

trnR/trnG

58325

58396

24

3

80.6

accD/psaI

64627

64674

24

2

96

petG/trnW

66304

66345

21

2

100

rpl33/rps18

68386

58429

22

2

100

clpP/rps12_5'-end

81892

81954

21

3

85.7

rpl16,rps3

82665

82718

18

3

85.2

rps3,rps19

83848

83901

18

3

85.2

rpl2, intron

88334

88396

21

3

91

ycf2

89622

89663

21

2

100

ycf2

90774

90827

18

3

85.2

ycf2

108203

108252

25

2

96

trnN/ycf1

123651

123710

20

3

85

trnL/rpl32

127141

127190

25

2

96

ycf1

Medicago

13248

13319

24

3

84.7

rps15/ycf1

17087

17158

24

3

100

ycf1

18922

19013

46

2

100

ycf1/trnN

18847

19031

37

5

84.3

ycf1/trnN

19100

19219

60

2

100

ycf1/trnN

27448

27617

85

2

93

rrn16/trnV

36490

36669

60

3

98

ycf2

37267

37401

45

3

83.7

ycf2

38869

38940

36

2

100

ycf2/trnI

38954

38997

22

2

100

ycf2/trnI

39247

39368

61

2

89

trnI/rpl23

55590

55875

143

2

100

clpP/rps12_5'-end

55807

55920

57

2

88.6

clpP/rps12_5'-end

56146

56265

24

5

95

clpP/rps12_5'-end

56392

56466

25

3

100

clpP/rps12_5'-end

58382

58441

15

4

90

rps18

58799

58867

23

3

81.2

rps18/rpl33

65523

65586

32

2

96.9

cemA/psaI

67538

67702

33

5

91.5

accD

67639

67818

60

3

98

accD

68026

68214

63

3

100

accD

68251

68322

24

3

88.1

accD

68311

68436

63

2

93

accD

68577

68624

24

2

86.7

accD

68907

68954

24

2

96

accD

69341

69422

41

2

96

accD/trnQ

91311

91394

28

3

81

trnC/petN

99689

99742

18

3

92.6

psbZ/trnG

105175

105222

24

2

98

psaA


Guo et al. BMC Genomics 2007 8:228   doi:10.1186/1471-2164-8-228

Open Data