Table 2

Positively affected transcription factors in the long-lived mutants. The "num" column indicates the number of target genes of a transcription factor under a specific condition at the 0.01 significance level according to the ChIP-chip data.

Transcription Factor

Condition

Num

sch9Δ/wt

rasΔ/wt

tor1Δ/wt

p-value

q-value

p-value

q-value

p-value

q-value


CIN5

H2O2Hi

177

0.0022

0.012

7.5E-06

1.1E-04

0.0025

0.013

CIN5

H2O2Lo

315

4.5E-05

4.7E-04

2.4E-07

5.1E-06

0.0021

0.011

CIN5

YPD

274

0.0036

0.037

8.6E-07

3.5E-05

5.1E-04

0.0071

FHL1

H2O2Hi

188

0

0

8.8E-09

2.3E-07

2.2E-16

1.2E-14

FHL1

RAPA

214

0

0

5.6E-16

2.8E-14

0

0

FHL1

SM

287

0

0

1.5E-12

5.5E-11

0

0

FHL1

YPD

207

0

0

1.8E-14

1.7E-12

0

0

FKH2

H2O2Hi

331

0.0015

0.0087

1.3E-05

1.6E-04

1.4E-05

1.7E-04

GAT3

YPD

176

1.8E-14

1.7E-12

2.7E-08

1.4E-06

0

0

MET31

YPD

69

0.041

0.24

1.1E-04

0.0021

1.8E-04

0.0030

MET32

SM

93

1.4E-04

0.0012

1.8E-06

2.8E-05

1.4E-05

1.7E-04

MSN2

Acid

145

9.1E-04

0.0058

1.2E-05

1.6E-04

6.8E-07

1.2E-05

NDD1

YPD

190

0.037

0.23

2.8E-04

0.0041

8.2E-05

0.0017

NRG1

H2O2Hi

275

0.0087

0.035

5.5E-05

5.5E-04

0.088

0.22

NRG1

H2O2Lo

122

0.12

0.27

3.9E-06

5.8E-05

0.0081

0.033

PDR1

YPD

163

3.6E-06

1.3E-04

2.0E-04

0.0031

4.0E-06

1.3E-04

PUT3

H2O2Lo

156

4.7E-05

4.9E-04

2.4E-04

0.0019

0.0015

0.0086

RAP1

SM

387

0

0

5.7E-09

1.6E-07

1.1E-16

6.8E-15

RAP1

YPD

408

0

0

2.4E-10

1.6E-08

2.2E-16

3.2E-14

RGM1

YPD

107

2.3E-06

8.4E-05

3.1E-04

0.0045

4.0E-07

1.8E-05

RIM101

H2O2Lo

142

0.15

0.32

4.4E-04

0.0032

0.032

0.098

SFP1

SM

114

2.3E-15

9.9E-14

2.3E-07

5.1E-06

7.8E-16

3.6E-14

SMP1

YPD

181

1.2E-04

0.0022

0.0032

0.033

1.9E-04

0.0030

SOK2

BUT14

211

0.043

0.12

8.4E-05

7.9E-04

0.0045

0.020

STB1

YPD

89

0.16

0.61

0.036

0.23

3.6E-05

9.3E-04

SWI4

YPD

252

0.0074

0.070

8.9E-05

0.0018

1.4E-06

5.5E-05

XBP1

H2O2Lo

173

0.027

0.087

3.5E-05

3.8E-04

0.023

0.076

YAP5

YPD

167

1.7E-10

1.2E-08

3.7E-06

1.3E-04

6.7E-12

5.8E-10

YAP6

YPD

167

0.0037

0.038

1.6E-09

9.9E-08

1.0E-05

3.0E-04


Cheng et al. BMC Genomics 2007 8:219   doi:10.1186/1471-2164-8-219

Open Data