Table 1

Significantly enriched motifs with known transcription factors in the up-regulated gene sets

Consensus Sequence

Transcription Factor

sch9Δ/wt

ras2Δ/wt

tor1Δ/wt


p-value

q-value

p-value

q-value

p-value

q-value


RTGT-YGGRTG

FHL1

1.4E-07

2.1E-05

6.3E-05

0.0011

4.0E-08

9.4E-06

AGGGG

MSN2/MSN4

5.4E-08

1.1E-05

7.6E-05

0.0013

1.3E-07

2.1E-05

AWAGGGAT

GIS1

3.9E-05

9.3E-04

3.1E-04

0.0029

2.5E-05

7.2E-04

ARGGGG

MSN2/MSN4

0.0012

0.0065

0.0096

0.021

1.8E-04

0.0022

RYGWCASWAAW

SUM1

0.28

0.15

9.1E-04

0.0052

6.2E-04

0.0043

GACACAAAA

NDT80

0.0099

0.021

0.0082

0.019

0.0020

0.0084

GY-TSKCACGTG-G

PHO4

0.0039

0.012

2.0E-04

0.0023

0.0059

0.016

A-CACCC-TT

AFT1

0.0020

0.0082

0.0052

0.015

0.014

0.025

AMAA-TGTGG

MET4

0.24

0.14

4.6E-05

0.0010

0.029

0.038

CGCATMCCCCAC

MIG1

0.026

0.036

4.4E-04

0.0037

0.057

0.056

MWGTGTGGCR

MET31

0.046

0.050

7.7E-04

0.0048

0.059

0.058

RRTCACGTG

CBF1

0.59

0.25

2.9E-04

0.0028

0.076

0.067

GAW-TTCTAGAA

HSF1

0.029

0.038

0.0022

0.0090

0.23

0.13

ACCYT-AGGTT

ZAP1

0.13

0.096

1.4E-04

0.0018

0.24

0.14


Cheng et al. BMC Genomics 2007 8:219   doi:10.1186/1471-2164-8-219

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