Research article
LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
-
* Corresponding author: Hadi Quesneville hq@ccr.jussieu.fr
1 Laboratoire Ecologie, Systématique et Evolution, Université Paris Sud, Orsay, France
2 Laboratoire Bioinformatique et Génomique, Institut Jacques Monod, Paris, France
3 Laboratoire Génétique et Développement des Plantes, Université de Perpignan, Perpignan, France
4 Bennetzen laboratory, University of Georgia, Athens, GA, USA
BMC Genomics 2007, 8:218 doi:10.1186/1471-2164-8-218
Published: 6 July 2007Additional files
Additional file 1:
Sequences of the 41 LTR retrotransposon reference copies. Sequences can be uploaded in fasta format from the "Vitte_et_al_reference_copies.txt" text file. Note that reference copies are derived from genomic copies. Their LTR sequences have been homogenized by replacing the two LTR sequences by the sequence of the 5' LTR, to avoid detection problems, except for Osr9, Osr10, Osr11, Osr16, Osr18, Osr23, and Osr31 for which the position of the LTR was ambiguous (see text and Table 1 for details).
Format: TXT Size: 269KB Download file
