Table 9

Micromass culture-derived transcripts enriched in vehicle-treated primary chondrocytes (d3 vs d15_3/4). I.

HUGO gene symbol

Rank

RMS

RES


Rabggtb

16734

-0.040

-0.271

Ube2e2

16759

-0.041

-0.270

Cd68

16769

-0.041

-0.269

H2-T23

16830

-0.041

-0.270

Derl1

16834

-0.041

-0.268

Smarcc1

16853

-0.041

-0.267

Srxn1

16856

-0.041

-0.266

Klf10

16868

-0.042

-0.264

Zfhx1b

16879

-0.042

-0.263

H2afy3

16929

-0.042

-0.264

Wisp2

16973

-0.042

-0.264

Tbl1xr1

16976

-0.042

-0.262

Ppp1r3c

16979

-0.042

-0.260

D11lgp2e

17036

-0.043

-0.261

Smpdl3b

17079

-0.043

-0.262

Dock2

17125

-0.044

-0.262

Purb

17127

-0.044

-0.260

Grn

17130

-0.044

-0.258

1110035l05rik

17139

-0.044

-0.257

Kiaa1008

17185

-0.045

-0.257

E430025l02rik

17195

-0.045

-0.256

Timm8a

17293

-0.046

-0.259

C130006e23

17307

-0.046

-0.257

Rbm10

17319

-0.046

-0.256

A230103n10rik

17347

-0.046

-0.255

Cd151

17401

-0.047

-0.256

Srf

17409

-0.047

-0.254

Cacna1s

17507

-0.048

-0.257

Ythdf1

17529

-0.048

-0.256

Ppp2r1b

17539

-0.048

-0.254

Tead2

17545

-0.048

-0.252

Igsf7

17590

-0.049

-0.252

Per3

17604

-0.049

-0.251

G1p2

17739

-0.050

-0.256

Slco2a1

17786

-0.051

-0.256

Coq7

17918

-0.053

-0.260

Rarb

17940

-0.053

-0.259

Lcp1

17954

-0.053

-0.257

Dnaja1

17987

-0.053

-0.256

Thoc3

17993

-0.054

-0.254

Cd44

18041

-0.054

-0.254

Slc41a1

18171

-0.056

-0.258

Kif11

18232

-0.057

-0.259

Hspa5bp1

18235

-0.057

-0.257

Ncf4

18290

-0.058

-0.257

Bub1b

18292

-0.058

-0.254

Cap2

18295

-0.058

-0.252

Aig1

18340

-0.059

-0.251

Rfc3

18361

-0.059

-0.250

Stmn1

18396

-0.060

-0.249

9130213b05rik

18408

-0.060

-0.247

Tyms-Ps

18432

-0.060

-0.245

Timp3

18513

-0.062

-0.247

Tiparp

18564

-0.063

-0.247

Thbs4

18627

-0.064

-0.247

Wasf1

18652

-0.064

-0.245

Nupr1

18686

-0.065

-0.244

Ezh2

18706

-0.066

-0.242

Fbxl14

18709

-0.066

-0.239

Prim1

18780

-0.067

-0.240

Insig2

18805

-0.068

-0.238

B3gnt5

18858

-0.069

-0.238

Fam60a

18963

-0.072

-0.240

H2-M3

18972

-0.073

-0.237

Gja7

18974

-0.073

-0.234

Bex2

18987

-0.073

-0.231

Tk1

19043

-0.074

-0.231

1200015n20rik

19109

-0.076

-0.231

Clecsf5

19114

-0.077

-0.228

Ms4a7

19141

-0.078

-0.226

Cdca5

19163

-0.079

-0.223

C730042f17rik

19180

-0.079

-0.220

Trim25

19194

-0.080

-0.218

Efnb2

19207

-0.081

-0.215

Apex1

19236

-0.082

-0.212

Ddah2

19243

-0.082

-0.209

Bub1

19262

-0.083

-0.206

Nup43

19263

-0.083

-0.203

Rdh10

19270

-0.083

-0.199

2610201a13rik

19330

-0.086

-0.199

Rp2h

19406

-0.089

-0.198

Tnni1

19407

-0.089

-0.195

Myog

19423

-0.091

-0.191

Osmr

19486

-0.095

-0.190

Mmp9

19524

-0.097

-0.188

Tnnt1

19525

-0.098

-0.184

Fhod3

19528

-0.098

-0.179

D930038m13rik

19537

-0.099

-0.175

Nes

19567

-0.101

-0.172

Sbk1

19571

-0.102

-0.168

Dusp9

19594

-0.103

-0.165

Akr1b8

19622

-0.106

-0.161

Pdgfrb

19663

-0.110

-0.158

Tfrc

19667

-0.111

-0.154

Moxd1

19670

-0.111

-0.149

1810008k03rik

19681

-0.112

-0.145

Cpeb1

19710

-0.115

-0.141

6720475j19rik

19716

-0.116

-0.136

Ripk4

19718

-0.116

-0.131

Itga6

19756

-0.121

-0.127

Bmp5

19775

-0.124

-0.123

Lhx9

19776

-0.124

-0.117

Pkp2

19797

-0.129

-0.113

Chrna1

19808

-0.131

-0.108

Bhlhb2

19837

-0.142

-0.103

Gp49a

19847

-0.144

-0.097

Clecsf10

19893

-0.155

-0.092

Gch1

19902

-0.159

-0.086

D0h4s114

19908

-0.161

-0.079

Cxcl1

19928

-0.170

-0.072

Ch25h

19946

-0.178

-0.065

Mkrn3

19988

-0.228

-0.057

Ptprc

20016

-0.297

-0.046

Car6

20017

-0.298

-0.032

Nr1d2

20031

-0.368

-0.017

Evi2a

20033

-0.393

0.001

Plxnc1

18075

-0.055

-0.286

Cilp2

18106

-0.055

-0.285

Brca1

18148

-0.056

-0.285

Litaf

18149

-0.056

-0.283

Bc027246

18154

-0.056

-0.281

6820424l24rik

18268

-0.057

-0.285

Hrb

18272

-0.057

-0.283

Nnat

18303

-0.058

-0.282

P2ry12

18329

-0.058

-0.282

Cdca4

18343

-0.059

-0.280

6030404e16rik

18367

-0.059

-0.279

Tfec

18429

-0.060

-0.280

Nfe2l2

18440

-0.060

-0.278

Gtf2h2

18467

-0.061

-0.277

4930469p12rik

18504

-0.062

-0.277

Cul4b

18535

-0.062

-0.276

H2afy2

18547

-0.063

-0.274

1190002n15rik

18582

-0.063

-0.274

B430218l07rik

18591

-0.063

-0.272

Rgs18

18607

-0.064

-0.270

Frk

18631

-0.064

-0.269

Slc6a9

18633

-0.064

-0.267

Tgfbr2

18687

-0.065

-0.267

Tia1

18802

-0.068

-0.270

Lgr5

18844

-0.068

-0.270

Sgpp1

18909

-0.071

-0.271

Matn2

18924

-0.071

-0.269

Sox11

18931

-0.071

-0.266

Hus1

18980

-0.073

-0.266

D930015e06rik

19028

-0.074

-0.266

Apob48r

19032

-0.074

-0.263

Av344025

19045

-0.074

-0.261

Eno2

19047

-0.074

-0.258

2610024e20rik

19053

-0.075

-0.256

Chd1l

19093

-0.076

-0.255

Emr1

19145

-0.078

-0.255

Rgs4

19200

-0.081

-0.254

D030028o16rik

19211

-0.081

-0.252

Kif2c

19216

-0.081

-0.249

Ccl3

19220

-0.081

-0.246

Trim30

19232

-0.082

-0.244

Qrsl1

19242

-0.082

-0.241

Nr3c1

19281

-0.083

-0.240

Trip13

19282

-0.084

-0.237

Dna2l

19317

-0.085

-0.236

Tcf8

19335

-0.086

-0.233

Clecsf8

19341

-0.086

-0.230

Lyzs

19422

-0.090

-0.231

Palmd

19475

-0.095

-0.230

Tjp2

19487

-0.095

-0.227

D430019h16rik

19493

-0.096

-0.224

Sesn3

19501

-0.096

-0.221

Ereg

19507

-0.096

-0.218

Cx3cl1

19523

-0.097

-0.215

Fzd6

19529

-0.098

-0.211

Sod3

19564

-0.101

-0.209

Tnnt2

19580

-0.102

-0.206

Satb1

19599

-0.104

-0.203

Cd14

19606

-0.104

-0.200

Gbp2

19607

-0.104

-0.196

Tgfbi

19609

-0.105

-0.192

Chek1

19652

-0.109

-0.190

Tm4sf1

19653

-0.109

-0.186

Igf1

19679

-0.111

-0.183

Enpp1

19695

-0.113

-0.180

Slc15a3

19704

-0.114

-0.176

Pdpn

19725

-0.117

-0.173

Dkk1

19747

-0.119

-0.169

Slk

19759

-0.121

-0.166

Ankrd1

19794

-0.128

-0.163

Trp53bp1

19801

-0.129

-0.158

C79407

19804

-0.130

-0.153

2210010l05rik

19809

-0.131

-0.149

Eps8

19815

-0.133

-0.144

Dkk2

19862

-0.147

-0.141

Arhgap18

19863

-0.147

-0.136

Twist2

19878

-0.151

-0.131

Pcdha8

19915

-0.164

-0.126

Il4r

19926

-0.169

-0.121

Mdm1

19931

-0.172

-0.115

Phlda1

19957

-0.188

-0.109

Bhlhb5

19960

-0.192

-0.102

C130076o07rik

19964

-0.196

-0.095

5830411e10rik

19974

-0.207

-0.088

Ptpre

19989

-0.228

-0.080

Trib3

19990

-0.235

-0.071

9230117n10rik

19994

-0.241

-0.062

Pcdhb7

19998

-0.249

-0.053

Mmp3

20001

-0.252

-0.044

Cd34

20009

-0.274

-0.034

Thbd

20022

-0.310

-0.023

A830016g23rik

20023

-0.323

-0.011

Ahr

20028

-0.336

0.001


Rank = position of genes in the context of the ranked list of array genes

RMS = the ranked metric score

RES = the running enrichment score

James et al. BMC Genomics 2007 8:205   doi:10.1186/1471-2164-8-205

Open Data