Table 2

Gene sets used in GSEA.

Category name

Number of genes

Category name

Number of genes


Adipose

70

Nucleus_3

510

Apoptosis

39

Fkbp

33

Bone

116

3vs15_1.5x_1

497

Cartilage

28

3vs15_1.5x_2

497

Catalytic

245

3vs15_1.5x_3

497

Chaperone

81

3vs15_1.5x_4

497

Chemokine

31

3vs15_1.5x_5

76

Chromatin/Hdacs

24

Igf

48

Cyclin

225

Cart_2

299

Cytokine

127

Cart_3

352

1_Dnabind

500

Liver_1

260

2_Dnabind

448

Liver_2

260

Ecm

228

Blood

111

Electron_Transp

40

Protease_1

269

Gf Receptor

327

Protease_2

269

Gluconeogen

31

Phosphatase

473

Growth Factor

106

Dusp

20

Gtpase Activator

46

Kinase_1

499

Gtpase Activ

73

Kinase_2

499

Heparin Bind

37

Kinase_3

227

Hormone

75

Integrin_Rel

173

Muscle

198

Brain_Rel

379

Neg_Apoptosis

50

Hepatocyte

19

Oncogene

154

Obl_Oclast

16

Pos_Apoptosis

79

Interleukinrelated

175

Related_Apoptosis

311

Rgs_Related

44

Structure

151

Caspase_Related

47

Sugar_Bind

104

Creb_Atf3

32

Tf_Activ

56

Nuclear Receptor

138

Tf_Repress

55

Nuc_Hormone_Receptor

55

Tgfb

45

Mapkrelated

267

Tnf_Receptor

69

Membrane

260

Tumor Suppressor

48

Metabolism

196

Wnt

53

Nucleus_1

494

Actin_Cytoskel

38

Nucleus_2

494

Angiogen

57

Pzhorton.Farnum

413

Bmprelated

62

Hzhorton.Farnum

407

Cytoplasm

411

Erk_Related

40

Fgf_Related

64


James et al. BMC Genomics 2007 8:205   doi:10.1186/1471-2164-8-205

Open Data