|
Differentially expressed genes by microarray analysis |
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| Probe set ID |
Fold Change (fat/lean) |
T-test P-value |
SAM q-value |
Chr. Location |
GenBank ID |
Gene name |
|
|
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| Lipid Metabolism |
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| GgaAffx.24836.1.S1_at |
2.5 |
0.001 |
0.27 |
chr1: 100587339–100699482 |
XM_416725 |
propionyl-Coenzyme A-carboxylase |
| GgaAffx.22084.1.S1_at |
1.8 |
0 |
0.27 |
chr11: 59355–69450 |
No record |
lysophospholipase 3 |
| Gga.150.1.S1_at |
4.2 |
0.003 |
0.279 |
chr1: 167849591–167950628 |
NM_204252 |
fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) |
| GgaAffx.8095.1.S1_at |
1.6 |
0.006 |
0.324 |
chr1: 52216531–52245657 |
XM_416329 |
N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits |
| Gga.879.1.S1_at |
-6.7 |
0.001 |
0.27 |
chr11: 16001674–16006281 |
NM_205526 |
N-acetyltransferase |
| Gga.19791.1.S1_s_at |
1.9 |
0.003 |
0.279 |
chr2: 128797196–128808892 |
XM_418378 |
low density lipoprotein-related protein 12 |
| GgaAffx.9942.1.S1_at |
2.2 |
0.001 |
0.27 |
chr4: 81245396–81273837 |
XM_420814 |
acyl-CoA oxidase |
| GgaAffx.20938.1.S1_at |
1.3 |
0.007 |
0.329 |
chr5: 15830450–15831289 |
NM_001031187 |
pyruvate dehydrogenase complex, component X similar to glycerol-3-phosphate dehydrogenase 2; |
| GgaAffx.23939.1.S1_s_at |
7.5 |
0.005 |
0.301 |
chr7: 36699654–36750512 |
XM_422168 |
glycerol phosphate dehydrogenase 1, mitochondrial; FAD-linked glycerol-3-phosphate dehydrogenase |
| Gga.17037.1.S1_s_at |
1.6 |
0.005 |
0.308 |
chrZ: 15403025–15434404 |
NM_001031422 |
phosphatidylinositol-4-phosphate 5-kinase, type I, beta |
| GgaAffx.5721.1.S1_at |
2.1 |
0.001 |
0.27 |
chr3: 9206064–9214413 |
NM_001031039 |
lysocardiolipin acyltransferase |
| Energy Metabolism |
||||||
| Gga.11825.1.S1_at |
3.2 |
0.003 |
0.274 |
chr1: 109208120–109232230 |
XM_416788 |
glycerol kinase |
| Gga.9828.1.S1_a_at |
-3.2 |
0 |
0.27 |
chr1: 79394222–79396236 |
XM_416612 |
thioredoxin-like 4B |
| GgaAffx.4389.1.S1_at |
-1.6 |
0.004 |
0.284 |
chr10: 17276047–17283495 |
XM_425083 |
5-oxoprolyl-peptidase |
| GgaAffx.2243.2.S1_at |
2.3 |
0.002 |
0.27 |
chr26: 3685185–3702282 |
XM_418055 |
ATPase, Ca++ transporting, plasma membrane 4 |
| Gga.19534.1.S1_at |
8.3 |
0.002 |
0.27 |
chr9: 21559961–21563214 |
">XM_422814"> |
beta 1,3-galactosyltransferase, polypeptide 3 |
| Tumorigenesis |
||||||
| Gga.6519.1.S1_s_at |
-2.2 |
0.005 |
0.303 |
chr1: 21687403–21784133 |
XM_416014 |
suppression of tumorigenicity 7 |
| Gga.15871.1.S1_at |
-1.6 |
0.006 |
0.323 |
chr19: 8852117–8853712 |
CR387378 |
Tumor necrosis factor, alpha-induced protein 1 |
| Gga.12058.1.S1_at |
2.1 |
0.003 |
0.279 |
chr2: 135144222–135145306 |
XM_418407 |
similar to cylindromatosis (turban tumor syndrome); cylindromatosis 1, turban tumor syndrome |
| GgaAffx.22987.1.S1_at |
-1.6 |
0.002 |
0.27 |
chr5: 26523325–26529591 |
XM_421205 |
thrombospondin 1 |
| Gga.654.1.S2_at |
1.8 |
0.001 |
0.27 |
chr6: 4237546–4314610 |
NM_205190 |
ret proto-oncogene |
| Signal Transduction |
||||||
| GgaAffx.3663.1.S1_at |
-5.3 |
0.003 |
0.278 |
chr14: 8517712–8520620 |
XM_414857 |
similar to CASK interacting protein 1 |
| Gga.12193.1.S1_a_at |
9.0 |
0.007 |
0.324 |
chr2: 47562155–47581032 |
XM_418851 |
G-substrate |
| Gga.9510.1.S1_at |
1.9 |
0.007 |
0.329 |
chr22:537865–569787 |
NM_001030886 |
protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform |
| Gga.1761.2.S1_at |
13.8 |
0.002 |
0.27 |
chr3:107742849–107744353 |
XM_420066 |
similar to G-protein coupled receptor 116 |
| GgaAffx.4775.1.S1_s_at |
4.0 |
0.002 |
0.27 |
chr4:11707299–11760821 |
XM_420292 |
similar to receptor tyrosine kinase flk-1/VEGFR-2 |
| Gga.807.1.S1_at |
1.9 |
0.007 |
0.324 |
chr4:65686004–65686340 |
NM_001004368 |
kinase insert domain receptor (a type III receptor tyrosine kinase) (KDR) |
| Gga.12481.1.S1_s_at |
1.9 |
0.007 |
0.327 |
chr7:27843665–27860405 |
NM_001012920 |
protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b |
| Gga.6653.1.S1_at |
-1.7 |
0.004 |
0.281 |
chr11:17426083–17429654 |
NM_001030576 |
hepatic nuclear factor 4beta similar to suppressor of cytokine signaling 7; SH2 |
| GgaAffx.8729.1.S1_s_at |
-10.0 |
0 |
0.27 |
chrUn:137141542–137146475 |
XM_423895 |
domain containing SOCS box protein SOCS7; Nck, Ash and phospholipase C binding protein similar to prostaglandin E receptor 3; Rat kidney |
| GgaAffx.7207.1.S1_at |
5.7 |
0.002 |
0.27 |
chr8:29278163–29285596 |
XM_426672 |
prostaglandin EP3 receptor (alternative splicing results in two different receptors EP3a and EP3b); |
| Gga.10737.1.S1_s_at |
1.7 |
0.005 |
0.305 |
chr7:2212065–2223469 |
XM_421856 |
similar to Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated protein HEM- 2) |
| GgaAffx.8719.1.S1_at |
7.2 |
0.002 |
0.27 |
chr4:64869759–64912904 |
XM_420693 |
similar to regulator protein p122-RhoGAP – rat |
| Gga.12408.3.S1_a_at |
2.7 |
0.005 |
0.305 |
chr5:41375030–41383659 |
NM_204357 |
ataxin 3 |
| Gga.323.1.S1_at |
3.6 |
0.001 |
0.27 |
chrUn:147862083–147882739 |
NM_204801 |
tetraspanin 18 |
| Immunity |
||||||
| Gga.13806.1.S1_at |
-4.8 |
0.004 |
0.293 |
chr7:7186627–7189336 |
NM_204240 |
adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) |
| Gga.18504.1.S1_at |
6.9 |
0.003 |
0.278 |
chr5:5440836–5460278 |
CR390783 |
parvin, alpha |
| Gga.698.1.S1_at |
1.6 |
0.004 |
0.293 |
chr6:14652488–14704778 |
NM_205441 |
vinculin |
| Gga.11155.1.S1_s_at |
1.8 |
0.001 |
0.27 |
chr4:15341234–15354773 |
XM_420331 |
stromal antigen 2 |
| Others |
||||||
| Gga.11258.1.S1_at |
1.7 |
0.001 |
0.27 |
chr1:170378838–170513289 |
XM_417140 |
EF-hand domain family, member A1 |
| Gga.15085.2.S1_s_at |
6.6 |
0.001 |
0.27 |
chr1:172635432–172645292 |
XM_417167 |
CWF19-like 2, cell cycle control (S. pombe) |
| GgaAffx.5969.1.S1_at |
6.2 |
0.002 |
0.27 |
chr1:24071401–24234367 |
XM_416024 |
similar to dedicator of cytokinesis 4 |
| GgaAffx.12338.1.S1_s_at |
3.9 |
0.001 |
0.27 |
chr15:7114454–7122253 |
NM_001030665 |
tuftelin interacting protein 11 |
| GgaAffx.25724.1.S1_s_at |
7.4 |
0.002 |
0.27 |
chr18:5638526–5691321 |
XM_415648 |
similar to Stxbp4 protein |
| GgaAffx.6849.1.S1_at |
4.0 |
0.004 |
0.285 |
chr3:34026676–34050970 |
XM_419554 |
similar to endoplasmic reticulum oxidoreductin 1- Lbeta |
| GgaAffx.22370.3.S1_s_at |
4.3 |
0 |
0.27 |
chr3:1260579–1276286 |
XM_420116 |
similar to chromosome 17 open reading frame 28; downregulated in multiple cancer 1 |
| GgaAffx.6334.2.S1_at |
3.9 |
0.004 |
0.293 |
chr4:33725503–33732138 |
XM_420444 |
SH3 domain protein D19 |
| GgaAffx.22790.1.S1_s_at |
6.1 |
0.003 |
0.279 |
chr6:26875122–27047419 |
XM_421771 |
similar to actin-binding LIM protein 1 medium isoform |
| GgaAffx.26704.1.S1_at |
-5.2 |
0.001 |
0.27 |
chr8:14622890–14638649 |
XM_422345 |
similar to abhydrolase domain containing 7 |
| Gga.16560.1.S1_at |
3.3 |
0.003 |
0.279 |
chrE26C13:1961–7813 |
XM_422853 |
myeloid cell leukemia sequence 1 (BCL2-related) |
| Gga.16020.1.S1_at |
2.2 |
0 |
0.27 |
chrUn:92422001–92432256 |
NM_001031613 |
similar to Death-associated protein kinase 1 |
Wang et al. BMC Genomics 2007 8:193 doi:10.1186/1471-2164-8-193 |
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