Table 2

Extent of ycf15 motif (as defined by the tobacco sequence) in published angiosperm chloroplast genomes.

Speciesa

Accession Number

5' portion

3' portion

Length of intervening sequenceb (bp)


"basal" angiosperms

Amborella trichopoda

NC_005086

154

92

295

Nuphar advena

NC_008788

154

70

299

Nymphaea alba

NC_006050

154

74

299

Calycanthus floridus

NC_004993

152

92

291

Monocots

Acorus calamus

NC_007407

154

0

N/A

Phalaenopsis aphrodite

NC_007499

136

45

295

Saccharum officinarum

NC_006084

139

79

305

Zea mays

NC_001666

139

79

305

Eudicots Non-asterids

Arabidopsis thaliana

NC_000932

120

105

285

Eucalyptus globulus

NC_008115

154

106

296

Gossypium hirsutum

NC_007944

154

107

307

Lotus japonicus

NC_002694

0

98

N/A

Oenothera elata

NC_002693

154

110

284

Ranunculus macranthus

NC_008796

0

78

N/A

Spinacia oleracea

NC_002202

153

92

254

Vitis vinifera

NC_007957

154

107

292

Eudicots Asterids

Atropa belladonna

NC_004561

154

110

0

Epifagus virginiana

NC_001568

150

107

0

Helianthus annuus

NC_007977

0

53

N/A

Lactuca sativa

DQ383816

0

53

N/A

Lycopersicon esculentum

DQ347959

154

110

0

Nicotiana sylvestris

NC_007500

154

110

0

Nicotiana tobaccum

NC_001879

154

110

0

Nicotiana tomentosiformis

NC_007602

154

110

0

Panax ginseng

NC_006290

154

106

0

Solanum bulbocastanum

NC_007943

154

110

0

Solanum tuberosum

NC_008096

154

110

0


a ycf15 is 264 bp in the original annotation of Nicotiana, 147 bp in Amborella, 243 bp in Nymphaea and Calycanthus, 300 bp in 234 bp in Arabidopsis, 138 bp in Gossypium, 234 bp in Vitus, 213 bp in Atropa, 264 bp in Nicotiana sp. and Solanum sp., 264 bp in Lycopersicon, 162 bp in Helianthus, and 303 bp in Panax.

b N/A = not applicable (cases where either 5' or 3' portion is missing)

Raubeson et al. BMC Genomics 2007 8:174   doi:10.1186/1471-2164-8-174

Open Data