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Genes used in this study |
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| GENE NAME |
ABBREV |
LENGTH OF UPSTREAM |
GENE ID |
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| GLYCOLYSIS |
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| Hexokinase |
HK |
852 |
cgd6_3800 |
| Phosphoglycerokinase |
PGK |
986 |
cgd7_910 |
| Phosphofructokinase 1 |
PFK1 |
455 |
cgd3_1400 |
| Phospphofructokinase 2 |
PFK2 |
575 |
cgd2_2130 |
| Enolase |
Eno |
364 |
cgd5_1960 |
| Glyceraldehyde-3-phosphate dehydrogenase |
GAPDH |
837 |
cgd6_3790 |
| Fructose-bis-phosphate Aldolase |
Ald |
482 |
cgd1_3020 |
| Glucose-6-phosphate isomerase |
G6PI |
225 |
cgd2_3200 |
| Lactate Dehydrogenase |
LDH |
891 |
cgd7_480 |
| Phosphoglucomutase |
PGM |
606 |
cgd7_4270* |
| Pyruvate kinase |
PyK |
718 |
cgd1_2040 |
| Triose Phosphate Isomerase |
TPI |
500 |
cgd1_3040 |
| NUCLEOTIDE SALVAGE |
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| Inosine monophosphate dehydrogenase |
IMPDH |
1065 |
cgd6_20* |
| Adenosine Transporter |
AT |
879 |
cgd2_310 |
| Cytidine Triphosphate Synthase |
CTPS |
856 |
cgd5_1710 |
| Guanidine Monophosphate Synthase |
GMPS |
423 |
cgd5_4520* |
| RibonucleosideDiphosphate Reductase |
RDPR |
627 |
cgd6_1950 |
| deoxycytidine Monophosphate Deaminase |
dCMPD |
512 |
cgd2_2780 |
| Dihydrofolate reductase-Thymidyl Synthase |
DHFR-TS |
481 |
cgd4_4460 |
| Adenosine Kinase |
AK |
170 |
cgd8_2370* |
| Uridine Kinase |
UK |
404 |
cgd8_2810 |
| Thymidine Kinase |
TK |
362 |
cgd5_4440 |
| DNA REPLICATION |
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| DNA polymerase -α-subunit |
DNA pol α |
879 |
cgd8_870 |
| DNA polymerase -δ-catalytic subunit |
DNA pol δ |
234 |
cgd6_4410* |
| MCM 10p-like |
MCM 10p |
92 |
cgd6_1710 |
| MCM 2-like |
MCM2 |
485 |
cgd2_1100 |
| MCM3-associated |
MCM3-a |
882 |
cgd3_3570 |
| MCM3-like |
MCM3 |
370 |
cgd2_1600 |
| MCM4-like |
MCM4 |
638 |
cgd2_1250 |
| MCM5-like |
MCM5 |
155 |
cgd7_2920 |
| MCM6-like |
MCM6 |
604 |
cgd6_240* |
| MCM7-like |
MCM7 |
374 |
cgd4_970 |
| ORC/CDC6-like |
CDC6 |
1301 |
cgd4_4320 |
| RP-A ssb protein |
RP-A |
730 |
cgd2_4080 |
| RAD24/RF-C activator |
RAD24 |
571 |
cgd7_2660 |
| MCM7 domain containing |
MCM7-c |
760 |
cgd8_3360 |
| OOCYST WALL PROTEINS |
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| COWP1 |
COWP1 |
366 |
cgd6_2090 |
| COWP3 |
COWP3 |
530 |
cgd4_670 |
| COWP4 |
COWP4 |
197 |
cgd8_3350 |
| COWP5 |
COWP5 |
170 |
cgd7_5150 |
| COWP6 |
COWP6 |
688 |
cgd4_3090 |
| COWP8 |
COWP8 |
604 |
cgd6_200 |
| COWP9 |
COWP9 |
170 |
cgd6_210* |
| LARGE SECRETORY PROTEINS |
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| LSP1 |
LSP1 |
370 |
cgd7_3800* |
| LSP2 |
LSP2 |
370 |
cgd7_3810 |
| LSP3 |
LSP3 |
225 |
cgd7_3820* |
| LSP4 |
LSP4 |
454 |
cgd7_3830 |
| LSP5 |
LSP5 |
142 |
cgd7_3840 |
| LSP6 |
LSP6 |
257 |
cgd7_3860 |
| LSP7 |
LSP7 |
257 |
cgd7_3870 |
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Descriptions of the genes used in this study, organized by functional group. The lengths of the respective upstream sequences (distance until the previous CDS) and annotated gene ids for each C. parvum gene are shown. Gene ids marked by a * are those for which corresponding ortholog information in C. hominis could not be obtained. | |||
Mullapudi et al. BMC Genomics 2007 8:13 doi:10.1186/1471-2164-8-13 |
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