Table 1

Housekeeping genes expressed in 15 tissues

Tissues (total tags count sequenced)


Tag

Testis (56909)

Prostate (143559)

O vary (56154)

Mammary gland (40546)

Uterus (178824)

Vagina (50819)

Skin (161093)

Liver (170384)

Adipose tissue (158218)

Lung (159843)

Bone (74859)

Skeletal muscle (135530)

Cerebral cortex (161221)

Hypothalamus (165981)

Pituitary gland (128480)

Regulation by GDX, DHT, ADX or Gcc

Description [UniGene cluster, GenBank Accession no.]

General function


Housekeeping genes constantly expressed

GCCAAGTGGAG

109

87

216

94

141

203

147

154

184

159

123

146

96

129

111

eukaryotic translation elongation factor 2 [Mm.334671, BB705125]

Protein synthesis

GATTCCGTGAG

79

85

186

92

128

191

161

81

106

127

126

85

98

147

88

GDXm

ribosomal protein L37 [Mm.10474, AK012544]

Protein synthesis

CCTCGGAAAAT

9

10

21

10

21

32

19

11

22

12

25

35

20

25

28

ribosomal protein L38 [Mm.238817, BC055346]

Protein synthesis

GTAGCTCACAA

19

15

27

17

22

20

14

17

16

24

25

13

12

17

28

hypothetical protein [Mm.302962, BB767941]

Protein secretion

TAACTGGAGGA

30

10

27

10

10

28

19

10

16

28

15

7

22

28

12

GDXp

leukocyte receptor cluster (LR C) member 8 [Mm.22831, BC066768]

Cell defence

GTGGTGCACAC

19

10

11

10

9

24

11

16

14

18

15

13

15

29

24

RIKEN cDNA C030036P15 gene [Mm.36291, NM_172757]

Protein binding

CTCAACAGCAA

5

9

27

15

12

20

17

14

17

14

16

14

16

10

15

eukaryotic translation initiation factor 3, subunit 5 (epsilon) [Mm.182962, NM_025344]

Protein synthesis

GGTGATGAGGA

4

9

7

15

9

22

13

12

25

11

15

24

10

19

10

RIKEN cDNA 1500016L11 gene [Mm.295670, NM_026885]

Cell division

GGGGCTCTGGC

16

9

20

10

10

12

10

16

16

8

25

21

8

7

6

proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Mm.2261, NM_008951]

Cell defence

GCCTCAGAGAC

7

5

9

10

10

14

9

5

13

14

7

11

18

19

13

RIKEN cDNA 2410104I19 gene [Mm.29965, NM_133691]

translational initiation regulation

Previously postulated housekeeping genes

GAGCGTTTTGG

63

49

130a

84

119a

177a

127a

54

296a

153a

178a

93

238a

226a

61

peptidyl-prolyl cis-trans isomerase A (PPIase) [Mm.342899, XM_122578]

Protein synthesis

GCCTCCAAGGA

16

47a

98a

114a

70a

175a

149a

159a

366a

64a

159a

2332a

309a

267a

97a

DHTat, u

glyceraldehyde-3-phosphate dehydrogenase [Mm.303486, XM_285250]

Sugar metabolism

GATACTTGGAA

28a

90a

130a

171a

179a

132a

107a

79a

144a

295a

296a

8

102a

86a

62a

actin, beta, cytoplasmic [Mm.297, BB836462]

Cell structure

CCCTGAGTCCA

52a

18

159a

163a

102a

168a

174a

88a

134a

268a

444a

30

100a

86a

31

actin, beta, cytoplasmic [Mm.297, NM_007393]

Cell structure


aSignificant difference vs.no.of tags shown in bold (p < 0,05). The tag numbers were normalized by 100000.

Abbreviation: GDX, gonadectomy; DHT, dihydrotestosterone; ADX, adrenalectomy; Gcc, glucocorticoids;m, mammary gland; p, prostate; at, adipose tissue; u,uterus

Kouadjo et al. BMC Genomics 2007 8:127   doi:10.1186/1471-2164-8-127

Open Data