|
Summary of SSH sequence distributions amongst a panel of C. jejuni isolates |
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| Total |
1967-H9 (Cju35) |
1967-C2 |
Cj0264c |
629-C10 (Cju05) |
629-D8 |
629-D9 |
1967-A5 |
961-A9 |
670-D7 |
|
|
|
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| ST Complex |
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| ST-21 |
29 |
0 |
21 (72%) |
26 (90%) |
0 |
0 |
0 |
0 |
3 (10%) |
3 (10%) |
| ST-61 |
12 |
0 |
12 (100%) |
12 (100%) |
0 |
0 |
0 |
0 |
12 (100%) |
4 (31%) |
| ST-45 |
18 |
18 (100%) |
0 |
14 (78%) |
12 (67%) |
18 (100%) |
17 (94%) |
1 (5%) |
0 |
0 |
| ST-42 |
10 |
10 (100%) |
2 (20%) |
10 (100%) |
8 (80%) |
0 |
0 |
10 (100%) |
0 |
0 |
| ST-48 |
5 |
0 |
0 |
5 (100%) |
0 |
0 |
0 |
0 |
0 |
0 |
| ST-257 |
7 |
7 (100%) |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| Source of isolate |
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| human |
36 |
16 (44%) |
13 (36%) |
29 (81%) |
6 (17%) |
4 (11%) |
4 (11%) |
6 (17%) |
6 (17%) |
3 (8%) |
| cattle |
24 |
9 (38%) |
13 (54%) |
22 (92%) |
5 (19%) |
4 (17%) |
4 (17%) |
5 (19%) |
8 (33%) |
3 (12%) |
| rabbit |
8 |
3 (38%) |
4 (50%) |
7 (88%) |
3 (38%) |
3 (38%) |
3 (38%) |
0 |
1 (13%) |
0 |
| bird |
6 |
4 (67%) |
1 (17%) |
3 (50%) |
3 (50%) |
4 (67%) |
4 (67%) |
0 |
0 |
1 (17%) |
| badger |
3 |
3 (100%) |
0 |
2 (67%) |
3 (100%) |
3 (100%) |
2 (67%) |
0 |
0 |
0 |
| sheep |
3 |
0 |
3 (100%) |
3 (100%) |
0 |
0 |
0 |
0 |
0 |
0 |
| water |
1 |
0 |
1 (100%) |
1 (100%) |
0 |
0 |
0 |
0 |
0 |
0 |
| total C. jejuni |
81 |
35 (43%) |
35 (43%) |
67 (83%) |
20 (25%) |
18 (22%) |
17 (21%) |
11 (13%) |
15 (19%) |
7 (8%) |
| C. coli |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
The number and percentage of isolates carrying each of the subtracted sequences is shown amongst isolates grouped either by MLST clonal complex or source. | ||||||||||
Hepworth et al. BMC Genomics 2007 8:110 doi:10.1186/1471-2164-8-110 |
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