Table 2 |
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|
Insertion Sequence elements with association with REP sequences. Table 2 shows the cases with an association ratio greater than 45% and with a total number of mobile elements in the genome equal or greater than four |
|||||
|
IS element |
IS family |
Pfam-domains |
Strains |
Type |
Assoc. ratio |
|
|
|||||
|
ISPsy8 |
IS3 |
Transposase_8 (orfA) rve (orfB) |
Pseudomonas syringae pv. tomato DC3000 |
1 |
5/5 |
|
ISPa11 |
IS110 |
Transposase_20 Transposase_9 |
Pseudomonas aeruginosa PA01 |
1 |
6/6 |
|
ISPpu9 |
IS110 |
Transposase_9 Transposase_20 |
Pseudomonas putida KT2440 |
1 |
7/7 |
|
ISPpu10 |
IS110 |
Transposase_9 Transposase_20 |
Pseudomonas putida KT2440 |
1 |
7/7 |
|
ISRm22 |
IS4 |
Transposase_11 |
Sinorhizobium meliloti 1021 |
1 |
10/10 |
|
ISRm19 |
IS110 |
Transposase_20 |
Sinorhizobium meliloti 1021 |
1 |
4/4 |
|
ISPsy7 |
IS110 |
Transposase_9 Transposase_20 |
Pseudomonas syringae pv. tomato DC3000 |
2 |
6/10 |
|
ISRm5 |
IS256 |
Transposase_mut |
Sinorhizobium meliloti 1021 |
2 |
5/7 |
|
ISNm1106 |
IS5 |
Transposase_11 |
Neisseria meningitidis MC58 |
2 |
4/7 |
|
ISNm1106 |
IS5 |
Transposase_11 |
Neisseria meningitidis Z2491 |
2 |
7/14 |
|
Transp. and PivNM COG3547 |
IS110 |
Transposase_9. Transposase_20. |
Neisseria meningitidis MC58 |
2 |
3/5 |
|
|
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|
Tobes and Pareja BMC Genomics 2006 7:62 doi:10.1186/1471-2164-7-62 |
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