Table 1

Identifying modules that repeated from one dataset to another

Ontology term

rRNA

Prot

Ubiq


DNA Dmg

Env Stress

Cell Cycle

DNA Dmg

Env Stress

Cell Cycle

DNA Dmg

Env Stress

Cell Cycle


35S primary transcript processing

1E-17

8.8E-16

7.5E-16

0.17

0.51

0.52

0.26

1

0.16

processing of 20S pre-rRNA

2E-32

5E-19

3.8E-32

0.018

0.37

1

0.17

1

0.11

ribosomal large subunit biogenesis

9.6E-13

0.0000071

3.5E-15

0.38

1

0.38

1

1

0.62

rRNA modification

2.1E-08

0.0043

0.00014

0.66

0.019

0.00066

1

1

0.62

rRNA processing

1.2E-25

1.6E-16

2.5E-23

0.48

1

0.62

0.11

1

0.046

protein biosynthesis

0.0001

1.1E-11

0.0023

5.9E-83

5.6E-108

1.4E-80

0.53

0.42

0.00033

translational elongation

0.62

0.14

0.63

2.1E-08

3E-08

1.7E-09

1

1

0.64

translational initiation

0.19

1

0.025

0.000017

1.8E-14

3.4E-07

0.41

1

0.25

ubiquitin-dependent protein catabolism

0.039

0.02

0.071

0.027

0.048

0.018

2.5E-25

7.3E-25

6.3E-17

ATP-dependent RNA helicase activity

7.2E-11

9.2E-08

4.1E-11

0.39

0.62

1

1

1

0.62

DNA-directed RNA polymerase activity

6.1E-13

4E-08

1.4E-09

0.77

0.012

0.13

0.42

1

0.4

snoRNA binding

1.3E-27

7.6E-17

2.4E-25

0.042

0.51

0.76

0.42

1

0.16

structural constituent of ribosome

0.00012

2.2E-11

0.000078

3.1E-92

5.3E-117

1.8E-95

0.097

0.41

0.0021

translation initiation factor activity

0.16

0.48

0.14

4.7E-08

5.5E-17

2.3E-10

1

1

0.39

endopeptidase activity

0.25

0.21

0.62

0.16

0.62

0.39

9.2E-21

2.6E-18

2.7E-11

nucleolus

1.6E-48

3.4E-29

1.3E-45

0.18

0.65

0.84

0.021

0.48

0.0056

nucleus

1.2E-18

8.3E-13

7.8E-10

0.0053

2.1E-07

0.12

0.0048

1

0.033

small nucleolar ribonucleoprotein complex

7.9E-20

2.8E-09

1.3E-14

0.16

0.67

0.42

0.63

1

0.39

cytosolic large ribosomal subunit

0.03

0.0000016

0.0087

2.1E-65

3.4E-75

6.1E-67

0.021

1

0.0056

cytosolic small ribosomal subunit

0.059

0.0013

0.26

1.5E-41

1.2E-47

4.6E-42

0.073

1

0.03

ribosome

1

0.39

0.3

2.7E-09

6.2E-14

3.7E-09

1

1

0.62


*For each module in each dataset analyzed, an EASE analysis [25] was performed by using Fisher's exact test and the resulting p-values were placed into the table based on the prevalence of the GO (Gene Ontology) term being searched for. The most significant enrichments for a given term are indicated in italics

Carlson et al. BMC Genomics 2006 7:40   doi:10.1186/1471-2164-7-40

Open Data