Table 4

Using the annotation derived from FL-cDNAs, the alternative splicing effects are classified relative to the CDS and UTRs.

Rice


Type

AA

AD

ATE

SE

RE

IWI

TWI

SI

RI


CDS contained

1,508

679

390

311

184

1,224

1,353

351

2,111

CDS overlaps UTRs

1

1

113

75

2

0

0

342

0

3' UTRs contained

183

71

47

21

25

34

147

416

146

3' UTR overlaps CDS

1

1

49

23

0

0

0

246

0

5' UTR contained

468

336

200

80

65

136

84

367

165

5' UTR overlaps CDS

0

0

178

56

2

0

0

98

0


Totals

2,161

1,088

977

566

278

1,394

1,584

1,820

2,422


Arabidopsis


Type

AA

AD

ATE

SE

RE

IWI

TWI

SI

RI


CDS contained

1,206

509

97

138

65

330

441

211

1,789

CDS overlaps UTRs

0

0

37

26

0

0

0

106

0

3' UTRs contained

56

24

4

3

1

6

49

74

57

3' UTR overlaps CDS

0

0

11

4

0

0

0

63

0

5' UTR contained

234

160

58

24

20

86

16

202

140

5' UTR overlaps CDS

0

0

109

22

0

0

0

43

0


Totals

1,496

693

316

217

86

422

506

699

1,986


The categories are mutually exclusive in this analysis (i.e. those isoforms in one category are not present in any of the other five categories).

Campbell et al. BMC Genomics 2006 7:327   doi:10.1186/1471-2164-7-327

Open Data