Table 3

Summation of the distribution of the nine alternative splicing classes by events, assembly, cluster and gene for rice and Arabidopsis.

Rice


Isoform

Events

Assemblies

Clusters

Genes


AA

6,823 (18.6%)

8,171 (34.6%)

2,840 (31.8%)

2,838 (32.4%)

AD

3,604 (9.8%)

4,652 (19.7%)

1,599 (17.9%)

1,619 (18.5%)

ATE

4,188 (11.4%)

4,227 (17.9%)

1,417 (15.8%)

1,503 (17.1%)

SE

1,339 (3.7%)

1,707 (7.2%)

1,142 (12.8%)

1,119 (12.8%)

RE

1,496 (4.1%)

1,957 (8.3%)

1,142 (12.8%)

1,128 (12.9%)

IWI

2,444 (6.7%)

2,513 (10.7%)

2,139 (23.9%)

2,085 (23.8%)

TWI

2,982 (8.1%)

3,141 (13.3%)

2,543 (28.4%)

2,475 (28.2%)

SI

6,887 (18.8%)

7,592 (32.2%)

4,035 (45.1%)

3,933 (44.8%)

RI

6,887 (18.8%)

5,579 (23.7%)

4,035 (45.1%)

3,924 (44.7%)


Totals

36,650

23,592

8,945

8,772


Arabidopsis


Isoform

Events

Assemblies

Clusters

Genes


AA

3,885 (23.9%)

4,220 (36.2%)

1,720 (33.4%)

1,793 (33.8%)

AD

1,854 (11.4%)

2,179 (18.7%)

865 (16.8%)

906 (17.1%)

ATE

900 (5.5%)

913 (7.8%)

340 (6.6%)

390 (7.3%)

SE

396 (2.4%)

442 (3.8%)

348 (6.8%)

357 (6.7%)

RE

415 (2.6%)

486 (4.2%)

348 (6.8%)

361 (6.8%)

IWI

722 (4.4%)

729 (6.3%)

685 (13.3%)

695 (13.1%)

TWI

770 (4.7%)

794 (6.8%)

713 (13.8%)

743 (14.0%)

SI

3,655 (22.5%)

3,667 (31.4%)

2,467 (47.9%)

2,521 (47.5%)

RI

3,655 (22.5%)

2,945 (25.3%)

2,467 (47.9%)

2,510 (47.2%)


Totals

16,252

11,665

5,155

5,313


Percentages are based upon the total counts shown below. They do not include those assemblies, clusters, and genes not implicated in alternative splicing. An event is defined as the occurrence of one of the nine isoforms within an assembly. An assembly derived from overlapping EST and FL-cDNA alignments can contain more than one event.

Campbell et al. BMC Genomics 2006 7:327   doi:10.1186/1471-2164-7-327

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