|
Overview of representative hits above 0.8 |
||||
| Lab/Condition |
Cog/Protein Name |
Correlation |
P-value |
Protein Function |
|
|
||||
| B01/Gram-negative |
COG0763/Lipid A disaccharide synthetase |
0.95 |
1.71E-09 |
Involved in Lipid A biosynthesis [26–28] |
| COG0774/UDP-3-O-acyl-N-acetylglucosamine deacetylase |
0.95 |
1.71E-09 |
Involved in Lipid A biosynthesis [29] [27,30] |
|
| COG1212/CMP-2-keto-3-deoxyoctulosonic acid synthetase |
0.95 |
1.71E-09 |
Involved in lipopolysaccharide biosynthesis [31] |
|
| COG2877/3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
0.95 |
1.71E-09 |
Involved in lipopolysaccharide biosynthesis [32] |
|
| COG0848/Biopolymer transport protein |
0.95 |
1.71E-09 |
Outer membrane transporters [33,34] |
|
| COG2885/Outer membrane protein |
0.84 |
2.46E-09 |
Outer membrane protein [35] |
|
| B02/Gram-positive |
COG3764/Sortase |
1.0 |
2.59E-08 |
Plasma membrane protein [36] |
| COG2344/AT-rich DNA-binding protein |
0.92 |
7.77E-07 |
Transcriptional regulator [37] |
|
| COG3966/Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) |
0.84 |
1.2E-05 |
Cell wall and membrane component protein [38] |
|
| B29/Growth on MacConkey Agar |
COG4206/Outer membrane cobalamin receptor protein |
0.99 |
8.04E-09 |
Outer membrane protein [39] |
| COG4787/Flagellar basal body rod protein |
0.97 |
2.33E-07 |
Periplasmic protein [40] |
|
| COG3166/Tfp pilus assembly protein PilN |
0.83 |
9.77E-06 |
Outer membrane proteins [41] |
|
| B30/Oxidase |
COG3278/Cbb3-type cytochrome oxidase, subunit 1 |
0.85 |
7.84E-06 |
Oxidase protein subunit |
| B30/Oxidase |
COG2993/Cbb3-type cytochrome oxidase, cytochrome c subunit |
0.85 |
7.84E-06 |
Oxidase protein subunit |
| B31/Catalase |
COG0753/Catalase |
0.97 |
7.69E-06 |
Peroxisomal Marker Enzyme |
| COG1607/Acyl-CoA hydrolase |
0.97 |
7.69E-06 |
Enzyme involved in lipid metabolism [13] |
|
| FAC/L-Arabinose |
COG3717/5-keto 4-deoxyuronate isomerase |
0.97 |
3.95E-05 |
Enzyme involved in carbohydrate metabolism [14,15] |
| FAM/D-Mannose |
COG0246/Mannitol-1-phosphate/altronate dehydrogenases |
0.85 |
4.68E-05 |
Oxidizes mannitol to mannose [42] |
| FAT/Trehalose |
COG2182/Maltose-binding periplasmic proteins/domains |
0.94 |
3.4E-05 |
Maltose-related protein [16] |
| G03/Motile |
COG0835/Chemotaxis signal transduction protein |
0.94 |
4.93E-09 |
Chemotaxis-related protein |
| COG1345/Flagellar capping protein |
0.94 |
4.93E-09 |
Flagella-related protein |
|
| COG1516/Flagellin-specific chaperone FliS |
0.94 |
4.93E-09 |
Flagella-related protein |
|
Goh et al. BMC Genomics 2006 7:257 doi:10.1186/1471-2164-7-257 |
||||