Table 3

25 novel alternative splicing events in androgen-stimulated LNCaP cells

Ensembl ID

Name

Description

Splice description


ENST00000248342

eIF3k

Eukaryotic translation initiation factor 3 subunit 12

25 bp deletion of 3' end of exon 1

ENST00000207437

MLEY_HUMAN

Myosin light chain 1, slow-twitch muscle A isoform

64 bp deletion of 5' end of exon 2 (contained in 5' UTR)

ENST00000330964

RPS27L

40S ribosomal protein S27-like protein

Deleteion of retained intron in exon 1 (54 bp of coding sequence)

ENST00000358666

UBL5

Ubiquitin-like protein 5

121 bp deletion of 3' end of exon 1 (contained in 5' UTR)

ENST00000262746

PRDX1

Peroxiredoxin 1

227 bp deletion of 3' end of exon 1 (contained in 5' UTR)

ENST00000297290

BRI3

Brain protein I3

See Figure 3.

ENST00000341480

MED18

Mediator of RNA polymerase II transcription, subunit 18 homolog

Deletion of retained intron in exon 3 (entriely contained in 3' UTR)

ENST00000270799

RPL11

60S ribosomal protein L11

89 bp deletion of 3' end of exon 2 and 103 bp deletion of 5' end of exon 5

ENST00000303553

NDUFA3

NADH-ubiquinone oxidoreductase B9 subunit

Deletion of 45 bp retained intron in exon 4

ENST00000222673

OGDH (MTpc)

2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor

Deletion of 210 bp retained intron (contained in 3' UTR)

ENST00000361643

This gene can be found on Chromosome MT at location 1,673–3,230.

Deletion of 47 bps

ENST00000361390

ROPN1B (MT)

NADH-ubiquinone oxidoreductase chain 1

Deletion of 648 bp

ENST00000302192

Q8WUV6_HUMAN

Podocalyxin-like 2

Deletion of 363 bp retained intron in exon 8

ENST00000361643

This gene can be found on Chromosome MT at location 1,673–3,230.

Deletion of 1268 bps

ENST00000261798

CSNK1A1

Casein kinase I, alpha isoform

Insertion of unknown length between exons 4 and 5

ENST00000339892

This gene can be found on Chromosome 1 at location 234,416,172–234,416,946.

Deletion of 42 bp in 3' UTR

ENST00000322297

OAZ1

Ornithine decarboxylase antizyme

Deletion of last 4 coding bp and 54 bp of 3' UTR

ENST00000224892

LHPP

Phospholysine phosphohistidine inorganic pyrophosphate phosphatase

Deletion of last 105 bp of exon 1, exons 2–6, and first 608 bp of exon 7

ENST00000361381

NU4M_HUMAN (MT)

NADH-ubiquinone oxidoreductase chain 4

Deletion of 152 bp

ENST00000358666

UBL5

Ubiquitin-like protein 5

80 bp deletion of 3' end of exon 1 (contained in 5' UTR)

ENST00000239377

PCMT1

Protein-L-isoaspartate(D-aspartate) O-methyltransferase

47 bp deletion of 3' end of exon 7 (10 bp coding, remainder in 5' UTR)

ENST00000361899

ATP6 (MT)

ATPase protein 6

Deletion of 91 bp

ENST00000291565

PDXK

Pyridoxal kinase

Deletion of 281 bp retained intron (contained in 3' UTR)

ENST00000308964

This gene can be found on Chromosome 19 at location 60,851,213–60,856,333.

42 bp deletion of 3' end of exon 2, exons 3–5, and first 541 bp of exon 6

ENST00000361390

ROPN1B(MT)

NADH-ubiquinone oxidoreductase chain 1

Deletion of 346 bp


Bainbridge et al. BMC Genomics 2006 7:246   doi:10.1186/1471-2164-7-246

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