Table 2

AgBase GO annotations by species and evidence code.

Species

GO Associations

No. Proteins Annotated

UniParc Proteins Annotated (ISS)

No. Papers Curated


Chicken

1 007

142

80

24

Cow

4 411

382

4

13

Sheep

316

61

0

0

Channel Catfish

19

3

0

2


We aim to increase the coverage of GO annotations in agriculturally important species and we are currently GO annotating chicken, cow, sheep and channel catfish. To improve GO coverage, we determine which proteins currently have no GO annotations and use GOanna to do a 'first-pass' annotation based on sequence homology (ISS). We have also provided GO annotations via literature curation for chicken, cow and channel catfish. We do not currently provide IEA annotations.

McCarthy et al. BMC Genomics 2006 7:229   doi:10.1186/1471-2164-7-229

Open Data