Table 2

Pair-wise comparison of the 1,528 conserved genes among the four sequenced strains of Xylella fastidiosa.

Strains

Bp

Paired (%)

Unpaired (%)

INDEL (%)

External (%)

Internal (%)

SNP (%)

Transition (%)

Transversion (%)


9a5c + Ann1

3051309

2951615 (96.733)

99694 (3.267) a

56195 (1.842)

55009 (1.803)

1186 (0.039)

43499 (1.426)

6390 (0.209)

37071 (1.215)

9a5c + Dixon

3038700

2915651 (95.951)

123049 (4.049) a

82760 (2.724)

80563 (2.651)

2197 (0.072)

40289 (1.326)

5956 (0.196)

34277 (1.128)

9a5c + Temecula1

3047657

2971366 (97.497)

76291 (2.503) c

31527 (1.034)

30196 (0.991)

1331 (0.044)

44764 (1.469)

6588 (0.216)

38176 (1.253)

Ann1+ Dixon

3019029

2920562 (96.738)

98467 (3.262) b

75229 (2.492)

73471 (2.434)

1758 (0.058)

23238 (0.77)

3224 (0.107)

19939 (0.66)

Ann1+ Temecula1

3047447

2971117 (97.495)

76330 (2.505) c

57413 (1.884)

55283 (1.814)

2130 (0.07)

18917 (0.621)

3071 (0.101)

15808 (0.519)

Dixon+Temecula1

3013442

2903990 (96.368)

109452 (3.632) b

83880 (2.784)

80452 (2.67)

3428 (0.114)

25572 (0.849)

3812 (0.126)

21704 (0.72)

Average

3036264

2939050 (96.80)

97213 (3.203)

64500 (2.13)

62495 (2.06)

2005 (0.07)

32713 (1.08)

4840 (0.16)

27829 (0.92)


a, b, c – Duncan grouping of ANOVA analysis result;

Doddapaneni et al. BMC Genomics 2006 7:225   doi:10.1186/1471-2164-7-225

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