|
Pair-wise comparison of the 1,528 conserved genes among the four sequenced strains of Xylella fastidiosa. |
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| Strains |
Bp |
Paired (%) |
Unpaired (%) |
INDEL (%) |
External (%) |
Internal (%) |
SNP (%) |
Transition (%) |
Transversion (%) |
|
|
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| 9a5c + Ann1 |
3051309 |
2951615 (96.733) |
99694 (3.267) a |
56195 (1.842) |
55009 (1.803) |
1186 (0.039) |
43499 (1.426) |
6390 (0.209) |
37071 (1.215) |
| 9a5c + Dixon |
3038700 |
2915651 (95.951) |
123049 (4.049) a |
82760 (2.724) |
80563 (2.651) |
2197 (0.072) |
40289 (1.326) |
5956 (0.196) |
34277 (1.128) |
| 9a5c + Temecula1 |
3047657 |
2971366 (97.497) |
76291 (2.503) c |
31527 (1.034) |
30196 (0.991) |
1331 (0.044) |
44764 (1.469) |
6588 (0.216) |
38176 (1.253) |
| Ann1+ Dixon |
3019029 |
2920562 (96.738) |
98467 (3.262) b |
75229 (2.492) |
73471 (2.434) |
1758 (0.058) |
23238 (0.77) |
3224 (0.107) |
19939 (0.66) |
| Ann1+ Temecula1 |
3047447 |
2971117 (97.495) |
76330 (2.505) c |
57413 (1.884) |
55283 (1.814) |
2130 (0.07) |
18917 (0.621) |
3071 (0.101) |
15808 (0.519) |
| Dixon+Temecula1 |
3013442 |
2903990 (96.368) |
109452 (3.632) b |
83880 (2.784) |
80452 (2.67) |
3428 (0.114) |
25572 (0.849) |
3812 (0.126) |
21704 (0.72) |
| Average |
3036264 |
2939050 (96.80) |
97213 (3.203) |
64500 (2.13) |
62495 (2.06) |
2005 (0.07) |
32713 (1.08) |
4840 (0.16) |
27829 (0.92) |
|
a, b, c – Duncan grouping of ANOVA analysis result; | |||||||||
Doddapaneni et al. BMC Genomics 2006 7:225 doi:10.1186/1471-2164-7-225 |
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