Table 5

Raw differences in counts per bin between control and test populations. Numbers in parenthesis are the ratio of the WGA amplified samples normalized to the average deviation in the unamplified replicate populations.

Halobacterium – 100 base bins


Versus Unamplified Control

Replicate 1

Replicate 2

Replicate 3

Replicate 4

GenomiPhi

Repli-G

PEP-PCR

DOP-PCR

Maximum Fold Overamplification

10

10

14

11

43 (3.8)

69 (6.1)

299 (26.6)

1633 (145.2)

Maximum Fold Underamplification

11

12

10

11

17 (1.5)

17 (1.5)

24 (2.2)

74 (6.7)

Maximum Difference in Counts per bin

27

26

31

35

67

101

299

1633


Campylobacter – 100 base bins


Versus Unamplified Control

Replicate 1

Replicate 2

Replicate 3

Replicate 4

GenomiPhi

Repli-G

PEP-PCR

DOP-PCR

Maximum Fold Overamplification

13

13

13

14

16 (1.2)

23 (1.7)

31 (2.3)

2668.5 (201.4)

Maximum Fold Underamplification

11

15

12

14

15 (1.2)

16 (1.2)

19 (1.5)

54 (4.2)

Maximum Difference in Counts per bin

18

17

15

17

23

23

6251

133


Halobacterium – 10 base bins


Versus Unamplified Control

Replicate 1

Replicate 2

Replicate 3

Replicate 4

GenomiPhi

Repli-G

PEP-PCR

DOP-PCR

Maximum Fold Overamplification

11

11

11

11

26 (2.4)

23 (2.1)

52 (4.7)

458 (41.6)

Maximum Fold Underamplification

10

9

9

12

15 (1.5)

15 (1.5)

15 (1.5)

15 (1.5)

Maximum Difference in Counts per bin

10

12

12

12

25

22

51

457


Campylobacter – 10 base bins


Versus Unamplified Control

Replicate 1

Replicate 2

Replicate 3

Replicate 4

GenomiPhi

Repli-G

PEP-PCR

DOP-PCR

Maximum Fold Overamplification

7

9

7

8

9 (1.2)

14 (1.8)

39 (5.0)

991 (127.9)

Maximum Fold Underamplification

8

7

8

7

11 (1.5)

11 (1.5)

11 (1.5)

11 (1.5)

Maximum Difference in Counts per bin

8

8

7

7

10

13

38

990


Pinard et al. BMC Genomics 2006 7:216   doi:10.1186/1471-2164-7-216

Open Data