Table 1

Comparison of genome coverage. Coverage was derived from the individual sequences generated from either unamplified control or whole genome amplified samples.

Halobacterium species NRC-1


Sample

Total Bases Sequenced

Nonredundant Bases Sequenced

Percent of Genome


Unamplified Control

9543911

2183656

84.9%

Unamplified Replicate 1

9540329

2188525

85.1%

Unamplified Replicate 2

9540870

2184161

85.0%

Unamplified Replicate 3

9541768

2179647

84.8%

Unamplified Replicate 4

9543517

2183939

84.9%

Averaged Replicates

9541621

2184068

84.9%

GenomiPhi

9736445

1287564

50.1%

Repli-G

9432145

933686

36.3%

PEP-PCR

9410215

921446

35.8%

DOP-PCR

9010086

249571

9.7%


Campylobacter jejuni


Sample

Total Bases Sequenced

Nonredundant Bases Sequenced

Percent of Genome


Unamplified Control

10605551

1635277

99.6%

Unamplified Replicate 1

10605882

1636507

99.7%

Unamplified Replicate 2

10592192

1636033

99.7%

Unamplified Replicate 3

10603419

1636620

99.7%

Unamplified Replicate 4

10588370

1637090

99.7%

Averaged Replicates

10597466

1636563

99.7%

GenomiPhi

10380921

1623858

98.9%

Repli-G

10939177

1625276

99.0%

PEP-PCR

10313911

1549641

94.4%

DOP-PCR

9605188

278645

17.0%


Pinard et al. BMC Genomics 2006 7:216   doi:10.1186/1471-2164-7-216

Open Data