Table 3

Takifugu rubripes protein genes under positive Darwinian selection with significantly lower (^a) or higher (^b) distance to the human ortholog than other fish species. Duplicated genes are given with rate differences between the two copies according to the relative rate test of Tajima (1993) at the 5% level with one asterisk and at the 1% level with two asterisks.
JGI Acc#	annotation according to human (UniGene)	duplicate rate difference

FRUP00000147506	syntaxin 3A ^a	0.178**
FRUP00000132184	lysyl oxidase-like 1 ^a	0.207**
FRUP00000139282	chloride intracellular channel 5 ^a	0.074
FRUP00000156028	twisted gastrulation ^a	-
FRUP00000136434	mitochondrial elongation factor G1 ^a	0.170*
FRUP00000139600	TAFA2 ^a	-
FRUP00000129212	serine/threonine protein kinase 6 ^a	-
FRUP00000153498	exostosin 1 ^a	0.086
FRUP00000133663	zinc finger protein 106 homolog ^b	0.201**
FRUP00000162759	hydroxysteroid (17-beta) dehydrogenase 4 ^a	-
FRUP00000133083	dUTP pyrophosphatase ^a	-
FRUP00000133686	excision repair cross-complementing 1 isoform 2 ^a	-
FRUP00000132409	cytochrome c oxidase subunit Va ^a	-
FRUP00000129950	glycine cleavage system protein H ^a	-
FRUP00000140923	mitogen-activated protein kinase kinase kinase kinase 2 ^a	-
FRUP00000157532	tryptophan rich basic protein ^a	-
FRUP00000133839	stress-induced-phosphoprotein 1 ^a	-
FRUP00000136741	dual specificity phosphatase 14 ^a	-
FRUP00000148346	transitional epithelia response protein ^a	-
FRUP00000149078	drebrin-like ^a	-
FRUP00000151439	jumonji domain containing 2C ^a	0.319**
FRUP00000134740	tumor necrosis factor type 1 receptor associated protein ^a	0.099**
FRUP00000133087	leprecan-like 1 ^a	0.317**
FRUP00000144902	calcium binding protein 5 ^a	0.012
FRUP00000162608	neurogenic differentiation 4 ^a	-
FRUP00000130779	FLJ21963 protein ^a	-
FRUP00000143840	thioredoxin domain containing ^a	-
FRUP00000154905	terminal deoxynucleotidyltransferase interacting factor 1 ^a	-
FRUP00000128255	SMILE protein ^a	-

Steinke et al. BMC Genomics 2006 7:20 doi:10.1186/1471-2164-7-20