|
List of the Chlamydiales-specific proteins |
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| Protein Loci |
Protein (Name/Size) |
C. tra |
C. mur |
C. pne |
C. cav |
C. abo |
Protochlam. |
Next best BLAST Hit (E value, protein length) |
|
|
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| CT007 (AAC67597) |
hypoth, 316aa |
0 |
8e-164 |
8e-108 |
6e-108 |
3e-105 |
8e-10, 320aa |
Plasmodium yoelii (0.063, 1491aa) |
| CT011 (AAC67601) |
hypoth, 418aa |
0 |
0 |
7e-151 |
2e-155 |
1e-157 |
7e-47, 445aa |
Desulfotalea psychrophila (1e-06, 337aa) |
| CT016 (AAC67606) |
hypoth, 242aa |
2e-139 |
3e-119 |
1e-82 |
4e-89 |
3e-86 |
2e-37, 233aa |
Rickettsia sibirica (0.20, 1851aa) |
| CT017 (AAC67607) |
hypoth. 433aa |
0 |
0 |
1e-122 |
7e-133 |
9e-135 |
4e-52, 431aa |
Thermo. tengcongensis (1e-06, 306 aa) |
| CT021 (AAC67611) |
hypoth, 247aa |
2e-139 |
4e-107 |
1e-47 |
3e-56 |
4e-53 |
2e-13, 245aa |
Xenopus laevis (1.7, 600aa) |
| CT031 (AAC67621) |
hypoth, 100aa |
4e-51 |
4e-42 |
2e-25 |
4e-26 |
2e-26 |
0.010, 107aa |
Mus musculus (3.6, 384aa) |
| CT038 (AAC67628) |
hypoth, 116aa |
1e-63 |
2e-49 |
4e-25 |
1e-25 |
2e-23 |
2e-09, 109aa |
Neurospora crassa (2.8, 1223aa) |
| CT053 (AAC67644) |
hypoth, 148aa |
2e-61 |
4e-57 |
2e-51 |
1e-50 |
1e-48 |
5e-29, 155aa |
Xenopus tropicalis (4.7, 1049aa) |
| CT066 (AAC67657) |
hypoth, 158aa |
3e-77 |
1e-75 |
8e-65 |
3e-65 |
5e-65 |
6e-41, 165aa |
Vibrio parahaemolyticus (1.8, 92aa) |
| CT079 (AAC67670) |
hypoth, 147aa |
4e-81 |
1e-71 |
2e-06 |
1e-29 |
1e-29 |
3e-06, 172aa |
Leuconostoc mesenteroides (0.11, 263aa) |
| CT131 (AAC67722) |
PTMP, 1138aa |
0 |
0 |
0 |
0 |
0 |
3e-33, 1348aa |
Plasmodium yoelii (0.31, 592aa) |
| CT181 (AAC67772) |
hypoth, 236aa |
7e-131 |
1e-113 |
3e-77 |
7e-81 |
4e-80 |
2e-10, 200aa |
Acinetobacter sp. (0.94, 371aa) |
| CT260 (AAC67853) |
hypoth, 163aa |
9e-91 |
9e-81 |
5e-62 |
3e-68 |
1e-67 |
4e-22, 159aa |
Sinorhizobium meliloti (0.18, 166aa) |
| CT266 (AAC67859) |
hypoth, 393aa |
0 |
5e-179 |
9e-103 |
5e-120 |
2e-119 |
4e-08, 498aa |
Xanthomonas axonopodis (2.8, 189aa) |
| CT271 (AAC67864) |
hypoth, 95aa |
1e-39 |
2e-36 |
7e-25 |
1e-25 |
9e-26 |
1e-10, 97aa |
Gibberella zeae (3.6, 1362) |
| CT273 (AAC67866) |
hypoth, 188aa |
2e-89 |
1e-77 |
2e-60 |
5e-63 |
2e-63 |
0.001, 149aa |
Corynebacterium efficiens (0.34, 640aa) |
| CT274 (AAC67867) |
type III secretion chaperone, 139aa |
3e-74 |
3e-70 |
1e-61 |
1e-62 |
1e-61 |
3e-31, 131aa |
Synechococcus elongatus (2e-05, 363aa) |
| CT303 (AAC67896) |
hypoth, 171aa |
2e-81 |
5e-66 |
2e-40 |
2e-47 |
6e-47 |
3e-04, 177aa |
Yersinia pestis (1.3, 373aa) |
| CT309 (AAC67902) |
hypoth, 266aa |
2e-144 |
2e-129 |
8e-86 |
1e-93 |
5e-94 |
2e-29, 263aa |
Methanococcus jannaschii (2.6, 434aa) |
| CT312 (AAC67905) |
pred. ferredoxin, 123aa |
6e-67 |
6e-54 |
1e-30 |
7e-36 |
1e-35 |
1e-04, 130aa |
Pan troglodytes (1.2, 1524aa) |
| CT350 (AAC67945) |
hypoth, 566aa |
0 |
0 |
2e-141 |
3e-157 |
1e-157 |
2e-30, 561aa |
Nostoc sp. PCC 7120 (7e-06, 1547aa) |
| CT351 (AAC67946) |
hypoth, 697aa |
0 |
0 |
0 |
0 |
0 |
5e-53, 720aa |
Rattus norvegicus (3.4, 389aa) |
| CT355 (AAC67950) |
hypoth, 353aa |
0 |
3e-161 |
3e-101 |
8e-101 |
1e-102 |
1e-21, 375aa |
Chromobacterium violaceum (0.82, 556aa) |
| CT384 (AAC67980) |
hypoth, 539aa |
0 |
0 |
9e-106 |
4e-113 |
1e-111 |
2e-14, 580aa |
Pseudomonas fluorescens (0.29, 314aa) |
| CT387 (AAC67984) |
hypoth, 691aa |
0 |
0 |
0 |
0 |
0 |
4e-160, 740aa |
Rubrobacter xylanophilus (5e-10, 263aa) |
| CT421.2 (AAC68031) |
hypoth, 53aa |
5e-23 |
2e-22 |
5e-19 |
7e-20 |
4e-19 |
2e-12, 52aa |
no other BLAST hits |
| CT425 (AAC68022) |
hypoth, 621aa |
0 |
0 |
0 |
0 |
0 |
0, 665aa |
Bordetella parapertussis (4e-10, 767aa) |
| CT429 (AAC68026) |
hypoth, 329aa |
4e-165 |
4e-162 |
5e-149 |
2e-151 |
7e-151 |
8e-96, 388aa |
Geobacter sulfurreducens (2e-04, 146aa) |
| CT443 (AAC68042) |
OmcB, 553aa |
0 |
0 |
0 |
0 |
0 |
4e-66, 558aa |
Rhodopirellula baltica (3e-25, 907aa) |
| CT446 (AAC68045) |
EUO protein, 183aa |
1e-78 |
8e-72 |
1e-50 |
2e-53 |
1e-52 |
4e-41, 139aa |
Magnaporthe grisea (2.1, 1259aa) |
| CT474 (AAC68074) |
LysM protein, 336aa |
2e-168 |
9e-116 |
5e-59 |
9e-71 |
7e-71 |
3e-04, 482aa |
no other BLAST hits |
| CT504 (AAC68105) |
hypoth, 288aa |
2e-127 |
1e-105 |
4e-64 |
2e-69 |
2e-68 |
1e-23, 376aa |
Mus musculus (3.0, 961aa) |
| CT538 (AAC68140) |
hypoth, 238aa |
8e-124 |
1e-120 |
5e-105 |
1e-108 |
1e-108 |
9e-65, 244aa |
Fritschea bemisiae (3e-59, 241aa) Enterococcus faecalis (0.067, 541aa) |
| CT546 (AAC68148) |
predicted OMP, 289aa |
3e-163 |
4e-157 |
6e-87 |
1e-92 |
1e-93 |
3e-23, 249aa |
Legionella pneumophila (0.042, 254aa) |
| CT547 (AAC68149) |
hypoth, 318aa |
2e-175 |
7e-158 |
8e-90 |
1e-92 |
2e-93 |
8e-29, 468aa |
Caenorhabditis elegans (4e-04, 1168aa) |
| CT548 (AAC68150) |
hypoth, 194aa |
3e-89 |
2e-67 |
1e-48 |
2e-49 |
3e-48 |
0.004, 185aa |
Drosophila melanogaster (0.17, 826aa) |
| CT556 (AAC68158) |
hypoth, 159aa |
1e-92 |
1e-82 |
9e-59 |
1e-60 |
1e-59 |
2e-06, 157aa |
Xenopus laevis (1.8, 1636aa) |
| CT560 (AAC68162) |
hypoth, 278aa |
1e-135 |
2e-125 |
1e-86 |
4e-94 |
5e-93 |
0.002, 281aa |
no other BLAST hits |
| CT573 (AAC68175) |
hypoth, 409aa |
0 |
1e-179 |
9e-90 |
3e-113 |
2e-106 |
1e-43, 472aa |
Pseudomonas syringae (0.46, 9376aa) |
| CT583 (AAC68185) |
Virulence plasmid pGP6 related protein, 263aa |
5e-134 |
6e-118 |
4e-82 |
4e-91 |
2e-92 |
1e-46, 245aa |
Crocosphaera watsonii (0.036, 333aa) |
| CT590 (AAC68192) |
hypoth, 954aa |
0 |
0 |
0 |
0 |
0 |
8e-96, 989aa |
Porphyromonas gingivalis (0.003, 645aa) |
| CT602 (AAC68205) |
hypoth, 130aa |
5e-60 |
1e-55 |
2e-35 |
3e-37 |
1e-37 |
2e-19, 131aa |
Actinobacillus pleuropneumoniae (2.8, 300aa) |
| CT616 (AAC68220) |
hypoth, 429aa |
0 |
0 |
2e-101 |
8e-115 |
3e-114 |
2e-09, 435aa |
Giardia lamblia (0.003, 1024aa) |
| CT623 (AAC68227) |
76 kDa Homolog, 446aa |
0 |
2e-155 |
5e-152 |
1e-154 |
1e-157 |
1e-28, 470aa |
Mycobacterium tuberculosis (0.18, 550aa) |
| CT631 (AAC68235) |
hypoth, 84aa |
1e-32 |
2e-31 |
1e-24 |
3e-28 |
8e-28 |
1e-11, 82aa |
No other BLAST hits |
| CT635 (AAC68239) |
hypoth, 144aa |
2e-62 |
5e-58 |
6e-45 |
1e-50 |
2e-51 |
4e-04, 146aa |
Gallus gallus (0.003, 1748aa) |
| CT642 (AAC68246) |
hypoth, 271aa |
2e-134 |
2e-116 |
2e-74 |
2e-79 |
8e-81 |
2e-22, 300aa |
Rattus norvegicus (1.6, 509aa) |
| CT652.1 (AAC68830) |
hypoth, 59aa |
5e-26 |
3e-24 |
7e-12 |
3e-12 |
7e-13 |
3e-05, 75aa |
Parachlamydia sp. (0.12, 70aa) |
| CT666 (AAC68261) |
hypoth, 83aa |
5e-40 |
9e-31 |
3e-35 |
1e-36 |
9e-37 |
0.43, 92aa |
Sacchromyces cerevisiae (3.7, 604aa) |
| CT667 (AAC68262) |
hypoth, 149aa |
3e-78 |
1e-65 |
3e-51 |
9e-55 |
4e-55 |
8e-16, 154aa |
Legionella pneumophila (0.005, 577aa) |
| CT670 (AAC68265) |
hypoth, 168aa |
1e-29 |
1e-27 |
2e-23 |
4e-24 |
3e-23 |
9e-10, 165aa |
No other BLAST hits |
| CT734 (AAC68329) |
hypoth, 221aa |
7e-106 |
1e-95 |
2e-51 |
1e-56 |
2e-57 |
1e-08, 240aa |
Caenorhabditis briggsae (1.1, 1072aa) |
| CT764 (AAC68359) |
hypoth, 268aa |
2e-154 |
4e-113 |
1e-46 |
7e-59 |
4e-59 |
2e-05, 256aa |
Tetraodon nigroviridis (1.5, 388aa) |
| CT788 (AAC68383) |
leader (60) peptide-periplasmic, 166aa |
1e-79 |
3e-61 |
9e-25 |
4e-34 |
1e-32 |
0.003, 158aa |
Caenorhabditis elegans (0.19, 2271aa) |
| CT809 (AAC68405) |
hypoth, 103aa |
1e-55 |
2e-44, 146aa |
5e-17 |
2e-23 |
2e-21 |
4e-05, 158aa |
Canis familiaris (2.1, 1831aa) |
| CT838 (AAC68435) |
YjgP/YjgQ family protein, 366aa |
0 |
0 |
e-126 |
e-130 |
3e-128 |
6e-24, 360aa |
Prochlorococcus marinus (0.18, 592aa) |
| CT845 (AAC68442) |
hypoth, 92aa |
2e-46 |
7e-33 |
1e-19 |
2e-17 |
1e-17 |
8e-10, 85aa |
Candida albicans (2.7, 557aa) |
| CT849.1 (AAC68455) |
hypoth, 62aa |
2e-28 |
9e-24 |
5e-10 |
2e-09 |
1e-08 |
1e-05, 81aa |
No other BLAST hits |
| CT865 (AAC68463) |
hypoth, 329aa |
2e-180 |
8e-146 |
7e-76 |
1e-77 |
4e-78 |
9e-23, 352aa |
Bacteroides thetaiotaomicron (0.20, 808aa) |
|
The Chlamydiales-specific proteins were identified by systematic BLASTP searches using Chl. trachomatis ORFs as probes, where the only significant BLAST hits obtained were for chlamydiae species (see Methods section). Accession numbers of the query sequences are shown beside the Chl. trachomatis loci (CT number) in the first column. The observed expected (E) values for various chlamydiae homologs as well as the first non-chlamydial hit in the BLAST results are given. E values of 0.0 indicate an extremely high degree of similarity between proteins sequences. The second column describes the function and the size of each query protein (protein sizes are described for other chlamydiae only if they noticeably differ from the query protein). Abbreviations are: C. tra, Chl. trachomatis; C. mur; Chl. muridarum; C. pne, Chlam. pneumoniae; C. cav, Chlam. caviae; C. abo, Chlam. abortus; hypoth, hypothetical protein; Omc; Outer membrane cytochrome; OMP, outer membrane protein; Protochlam, Protochlamydia; Pred., Predicted; PTMP, Possible transmembrane protein. | ||||||||
Griffiths et al. BMC Genomics 2006 7:14 doi:10.1186/1471-2164-7-14 |
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