Table 1

Ectopic transcription coverage for intact and pseudogene OR genes in human and mouse. Transcripts include ESTs and mRNAs. Shown are the number and percentage (in parenthesis) of OR genes for which evidence of transcription was found, relative to the entire OR repertoire. Lowest row indicates the average EST coverage per OR, calculated using the count of adult normal tissues ESTs from non-normalized libraries in each subgroup. -7E indicates pseudogenes excluding 7E subfamily members. Percentage of OR genes for which evidence of transcription was found based only on spliced ESTs was 9% for intact, 8% for pseudogenized human ORs, and 5% for intact, 4% for pseudogenized mouse ORs. The EST coverage based only on spliced ESTs dropped to about 0.04 for intact genes and pseudogenes excluding 7E members, while coverage was 0.17 for the 7E subfamily, significantly different from that of the other groups.

HUMAN

MOUSE

Intact

Pseudo

Intact

Pseudo


Transcripts

104 (26%)

117 (26%)

140 (14%)

45 (18%)

EST coverage

0.122

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0.103

0.127


Feldmesser et al. BMC Genomics 2006 7:121   doi:10.1186/1471-2164-7-121

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