Additional File 4.

Supplementary Figure S4 (Supplementary Fig S4 Transcriptome map of each chromosome.pdf). Comparative transcriptome map of human ES and EB on each chromosome of the genome. The transcriptome map shows the coexpression index value of genes that are displayed according to the position along the chromosome (horizontal axis). Each dot represents a gene expressed in ES (blue color) or EB (red). The yellow line represents the threshold of the coexpression index (0.3). The coexpression index was calculated as the average Person's correlation coefficient between the expression level of a given gene with that of every neighboring gene (10 up- and 10 downstream). The statistical significance of the co-expression pattern was confirmed by Monte-Carlo simulation (see Methods).

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Li et al. BMC Genomics 2006 7:103   doi:10.1186/1471-2164-7-103