Table 4 |
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|
Top 20 S. moellendorffii EST tBLASTX hits for A. thaliana ESTs that are not present within the P. patens EST database. |
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|
Non-redundant EST |
tBLASTX E-value |
Best BLASTX Descriptor in A. thaliana |
Accession Number |
|
|
|
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|
1 |
SmoC-1_01_H05 |
1E-107 |
expressed protein |
REF:NP_194688 |
|
2 |
SmoC-1_02_C05 |
1E-99 |
oligopeptide transporter OPT family protein |
REF:NP_192815 |
|
3 |
SmoC-1_01_L23 |
2E-99 |
putative Mg-protoporphyrin IX chelatase |
REF:NP_196867 |
|
4 |
SmoC-1_05_G17 |
2E-99 |
putative caffeoyl-CoA 3-O-methyltransferase |
REF:NP_195131 |
|
5 |
SmoC-1_05_K13 |
5E-90 |
chloroplast membrane protein (ALBINO3) |
REF:NP_180446 |
|
6 |
SmoC-1_01_E02 |
1E-89 |
cullin family protein |
REF:NP_567243 |
|
7 |
SmoC-1_05_G03 |
7E-87 |
putative UDP-galactose/UDP-glucose transporter |
REF:NP_563949 |
|
8 |
SmoC-1_05_I19 |
6E-86 |
expressed protein |
REF:NP_566060 |
|
9 |
SmoC-1_02_N15 |
9E-86 |
nicotinate phosphoribosyltransferase family protein |
REF:NP_179923 |
|
10 |
SmoC-1_03_I01 |
7E-80 |
glycoside hydrolase family 77 protein |
REF:NP_181616 |
|
11 |
SmoC-1_cn293 |
4E-77 |
amine oxidase family protein |
REF:NP_181830 |
|
12 |
SmoC-1_03_C24 |
9E-73 |
uridylyltransferase-related protein |
REF:NP_564010 |
|
13 |
SmoC-1_02_P14 |
5E-70 |
expressed protein |
REF:NP_199542 |
|
14 |
SmoC-1_06_P21 |
2E-69 |
RNase L inhibitor protein-related |
REF:NP_196569 |
|
15 |
SmoC-1_05_G10 |
3E-69 |
expressed protein |
REF:NP_191746 |
|
16 |
SmoC-1_03_C14 |
1E-66 |
putative isoflavone reductase |
REF:NP_565107 |
|
17 |
SmoC-1_03_N06 |
6E-65 |
transducin / WD-40 repeat family protein |
REF:NP_190148 |
|
18 |
SmoC-1_06_M11 |
1E-63 |
dehydration stress-induced protein |
GB:AAM62648 |
|
19 |
SmoC-1_06_B20 |
1E-60 |
putative membrane protein |
REF:NP_849987 |
|
20 |
SmoC-1_05_O21 |
2E-60 |
paired amphipathic helix repeat-containing protein |
REF:NP_186781 |
|
|
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|
The tBLASTX E-value of an EST varies with its BLASTX E-value in a small range (e.g. SmoC-1_01_H05 has a tBLASTX E-value of 1E-107 against its homologous A. thaliana EST and a BLASTX E-value of 2E-94 against the translated full length A. thaliana cDNA.). The homology ranking was based on the tBLASTX E-value. The identities of ESTs were putatively described by the A. thaliana protein with the lowest E-value in the BLASTX analysis. |
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|
Weng et al. BMC Genomics 2005 6:85 doi:10.1186/1471-2164-6-85 |
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