Table 6

The most abundantly represented transcripts in the A. ceylanicum cDNA libraries

non-redundant GenBank


A. ceylanicum cluster id

ESTs Per cluster

    ESTs from Library

Accession

C. elegans gene

iL3

Ad

Best identity descriptor

SW / TRa

E-value

Wormpep97b


AE00908.cl

323

320

3

C. elegans stress associated endoplasmic reticulum protein

NP_510604

9e – 37

F59F4.2b

AE00787.cl

205

205

0

C. elegans hsp-12.6 alpha-B-crystallin

Q20165

7e – 39

F38E11.2b

AE01104.cl

155

155

0

C. elegans microsomal signal peptidase 25 kDa subunit

Q9XWW1

8e – 80

Y37D8A.10b

AE00463.cl

119

118

1

C. elegans dlc-1 dynein light chain (10.3 kD)

NP_498422

9e – 56

T26A5.9b

AE00121.cl

110

0

110

C. elegans vit-3 Vitellogenin 3 precursor

NP_508613

7e – 121

F59D8.1b

AE00890.cl

84

84

0

C. elegans spp-4 SaPosin-like Protein family

NP_509237

5e – 16

T08A9.8b

AE00065.cl

84

84

0

C. elegans putative endoplasmic reticulum protein

NP_508656

1e – 35

F47B7.1b

AE00360.cl

74

74

0

novel

-

-

-

AE00048.cl

72

72

0

C. elegans rpl-29 60S ribosomal protein L29

NP_502671

6e – 25

B0513.3b

AE00003.cl

70

3

67

novel

-

-

-

AE01410.cl

63

60

3

Ostertagia ostertagi putative ES protein F7

CAD20464

3e – 86

F02A9.2

AE00056.cl

62

56

6

C. elegans hypothetical protein

AAK77617

5e – 39

M01H9.3ab

AE00464.cl

61

61

0

novel

-

-

-

AE00227.cl

59

0

59

Zea mays extensin-like protein

S49915

2e – 31

ZK84.1

AE00746.cl

54

0

54

C. elegans protein contains chitin binding peritrophin-A domain

AAA19083

3e – 54

B0280.5b

AE00750.cl

50

36

14

C. elegans far-7 fatty Acid/Retinol binding protein

NP_493708

7e – 45

K01A2.2ab

AE00072.cl

47

0

47

Beta vulgaris chitinase

S51939

6e – 12

C34D4.11

AE00591.cl

45

45

0

C. elegans hypothetical protein

AAF99918

7e – 26

F29B9.11b

AE01221.cl

44

44

0

Volvox carteri hydroxyproline-rich glycoprotein DZ-HRGP

CAB62280

1e – 29

Y59A8B.19

AE01407.cl

41

41

0

C. elegans elt-3 GATA-binding transcription factor like

CAA93510

5e – 18

K02B9.4b

AE00033.cl

41

0

41

Nippostrongylus brasiliensis hsp-20 Nbhsp20

CAA50655

8e – 56

T27E4.3

AE01361.cl

40

39

1

C. elegans ICD-1 inhibitor of cell death

AAA68776

1e – 75

C56C10.8b

AE00322.cl

39

37

2

C. elegans hypothetical protein

CAB54416

7e – 28

Y38E10A.24b

AE00536.cl

36

34

2

Homo sapiens unnamed protein product

BAB71316

4e – 134

F25B5.4a

AE00503.cl

35

13

22

C. elegans eft-3 elongation factor 1-alpha

NP_498520

3e – 283

F31E3.5b


a SW/TR is Swiss-prot and TrEMBL Proteinknowledgebase http://us.expasy.org/sprot/ webcite.

b C. elegans homolog has higher probability match than the best GenBank descriptor.

Mitreva et al. BMC Genomics 2005 6:58   doi:10.1186/1471-2164-6-58

Open Data