Research article
The odorant receptor repertoire of teleost fish
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* Corresponding author: John Ngai jngai@socrates.berkeley.edu
1 Department of Molecular and Cell Biology, Functional Genomics Laboratory, Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA
2 Grup de Recerca en Informàtica Biomèdica, Institut Municipal d'Investigació Mèdica, Universitat Pompeu Fabra, Centre de Regulació Genòmica, Psg. Marítim 37-49, 08003 Barcelona, Spain
BMC Genomics 2005, 6:173 doi:10.1186/1471-2164-6-173
Published: 6 December 2005Additional files
Additional File 1:
Supplement: Methods and legends for Figures S1-S8 and Tables S1-S4
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Additional File 2:
Figure S1. Multiple sequence alignment of zebrafish OR amino acid translations.
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Additional File 3:
Figure S2. Multiple sequence alignment of fugu OR amino acid translations.
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Figure S3. Multiple sequence alignment of tetraodon OR amino acid translations.
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Additional File 5:
Figure S4. Phylogeny of zebrafish ORs using maximum likelihood analysis.
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Figure S5. Phylogeny of zebrafish and mouse ORs using maximum likelihood analysis.
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Figure S6. Phylogeny of zebrafish, fugu and tetraodon ORs using maximum likelihood analysis.
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Figure S7. Phylogeny of zebrafish and mouse ORs rooted by mouse non-OR GPCRs.
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Additional File 9:
Figure S8. Phylogeny of zebrafish, fugu, tetraodon and lamprey ORs.
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Additional File 10:
Table S1. The zebrafish OR repertoire.
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Additional File 11:
Table S2. Pairwise intra-subfamily percent identities for zebrafish OR subfamilies.
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Additional File 12:
Table S3. Pairwise inter-subfamily percent identities for zebrafish OR subfamilies.
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Additional File 13:
Table S4. Pairwise inter-group percent identities for zebrafish OR families and mouse Class I and Class II ORs.
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