|
List of P. aeruginosa genes that were discussed in this report, categorized by their related functions. |
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| Gene (Name) |
Average signal of experimentals |
Average signal of controls |
p-value |
Fold change a |
|
|
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| Primary metabolism-related |
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| PA1317 (cyoA) |
70.5 |
159.9 |
0.048 |
-2.3 |
| PA1319 (cyoC) |
22.5 |
46.6 |
0.008 |
-2.1 |
| PA3621 (fdxA) |
321.7 |
648.6 |
0.008 |
-2.0 |
| PA4133 |
46.8 |
106.6 |
0.024 |
-2.3 |
| PA0654 (speD) |
416.9 |
804.4 |
0.008 |
-1.9 c |
| PA1687 (speE) |
77.8 |
204.8 |
0.008 |
-2.6 |
| PA4839 (speA) |
111.7 |
321.2 |
0.008 |
-2.9 |
| PA3607 (potA) |
65.8 |
143.7 |
0.008 |
-2.2 |
| PA3608 (potB) |
25.8 |
64.6 |
0.008 |
-2.5 |
| PA3609 (potC) |
40.0 |
83.00 |
0.008 |
-2.1 |
| PA3610 (potD) |
35.4 |
105.9 |
0.008 |
-3.0 |
| PA4432 (rpsL) |
493.8 |
1156.9 |
0.008 |
-2.3 |
| PA4563 (rpsT) |
1600.9 |
3648.5 |
0.008 |
-2.3 |
| PA5049 (rpmE) |
174.9 |
482.0 |
0.008 |
-2.8 |
| PA5315 (rpmG) |
340.3 |
761.5 |
0.008 |
-2.2 |
| PA0671 |
127.5 |
25.4 |
0.008 |
5.0 |
| PA3008 |
618.6 |
109.2 |
0.008 |
5.7 |
| Cellular protective mechanism-related |
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| PA4236 (katA) |
543.8 |
275.1 |
0.008 |
2.0 |
| PA4613 (katB) |
152.6 |
33.6 |
0.008 |
4.5 |
| PA4366 (sodB) |
1779.4 |
1923.3 |
0.484 b |
-1.1 c |
| PA4468 (sodM) |
27.7 |
18.8 |
0.008 |
1.5 c |
| PA3007 (lexA) |
1267.9 |
320.9 |
0.008 |
4.0 |
| PA3008 |
618.6 |
109.2 |
0.008 |
5.7 |
| PA3616 |
289.7 |
105.2 |
0.008 |
2.8 |
| PA3617 (recA) |
1917.5 |
706.1 |
0.008 |
2.7 |
| PA0669 |
59.4 |
20.9 |
0.008 |
2.8 |
| PA3413 |
766.0 |
174.7 |
0.008 |
4.4 |
| PA3414 |
459.5 |
47.0 |
0.008 |
9.8 |
| PA4763 (recN) |
1270.9 |
153.6 |
0.008 |
8.3 |
| Iron regulation-related |
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| PA2426 (pvdS) |
21.0 |
63.0 |
0.024 |
-3.0 |
| PA2398 (fpvA) |
99.5 |
566.1 |
0.008 |
-5.7 |
| PA4221 (fptA) |
154.6 |
417.9 |
0.008 |
-2.7 |
| PA4225 (pchF) |
42.1 |
139.0 |
0.008 |
-3.3 |
| PA4226 (pchE) |
103.3 |
263.0 |
0.008 |
-2.6 |
| PA4228 (pchD) |
101.1 |
235.1 |
0.008 |
-2.3 |
| PA4229 (pchC) |
101.2 |
267.6 |
0.008 |
-2.6 |
| PA4230 (pchB) |
49.6 |
212.1 |
0.008 |
-4.3 |
| PA4231 (pchA) |
35.6 |
102.6 |
0.008 |
-2.9 |
| PA2403 |
53.7 |
173.8 |
0.008 |
-3.2 |
| PA2404 |
45.6 |
138.1 |
0.008 |
-3.0 |
| PA2405 |
46.9 |
181.1 |
0.008 |
-3.9 |
| PA2406 |
61.4 |
113.3 |
0.008 |
-1.8 c |
| PA2407 |
91.8 |
300.9 |
0.008 |
-3.3 |
| PA2408 |
35.8 |
103.7 |
0.008 |
-2.9 |
| PA2409 |
50.9 |
188.6 |
0.008 |
-3.7 |
| PA2410 |
38.2 |
94.4 |
0.008 |
-2.5 |
| PA4156 |
3.2 |
16.3 |
0.008 |
-5.1 |
| PA3531 (bfrB) |
114.0 |
227.5 |
0.008 |
-2.0 |
| Pyocin system-related |
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| PA0985 |
86.9 |
45.2 |
0.024 |
1.9 c |
| PA1150 (pys2) |
359.3 |
123.9 |
0.008 |
2.9 |
| PA3866 |
129.6 |
58.9 |
0.008 |
2.2 |
| PA0612 |
941.5 |
177.8 |
0.008 |
5.3 |
| PA0613 |
220.4 |
96.1 |
0.008 |
2.3 |
| PA0614 |
635.5 |
220.0 |
0.008 |
2.9 |
| PA0615 |
708.0 |
169.1 |
0.008 |
4.2 |
| PA0616 |
1177.1 |
336.0 |
0.008 |
3.5 |
| PA0617 |
708.9 |
211.5 |
0.008 |
3.4 |
| PA0618 |
1085.4 |
350.1 |
0.008 |
3.1 |
| PA0619 |
1189.2 |
392.5 |
0.008 |
3.0 |
| PA0620 |
1328.8 |
313.4 |
0.008 |
4.2 |
| PA0621 |
1909.6 |
742.5 |
0.008 |
2.6 |
| PA0622 |
2536.5 |
833.8 |
0.008 |
3.0 |
| PA0623 |
2053.5 |
740.5 |
0.008 |
2.8 |
| PA0624 |
960.5 |
382.8 |
0.008 |
2.5 |
| PA0625 |
537.4 |
159.5 |
0.008 |
3.4 |
| PA0626 |
633.5 |
272.6 |
0.008 |
2.3 |
| PA0627 |
630.3 |
270.0 |
0.008 |
2.3 |
| PA0628 |
652.2 |
297.4 |
0.008 |
2.2 |
| PA0629 |
407.9 |
154.8 |
0.008 |
2.6 |
| PA0630 |
416.1 |
211.9 |
0.008 |
2.0 |
| PA0631 |
294.6 |
128.3 |
0.008 |
2.3 |
| PA0632 |
270.8 |
143.8 |
0.008 |
1.9 c |
| PA0633 |
1979.9 |
596.6 |
0.008 |
3.3 |
| PA0634 |
589.4 |
169.8 |
0.008 |
3.5 |
| PA0635 |
836.9 |
232.3 |
0.008 |
3.6 |
| PA0636 |
1278.8 |
380.6 |
0.008 |
3.4 |
| PA0637 |
589.8 |
178.4 |
0.008 |
3.3 |
| PA0638 |
908.6 |
283.9 |
0.008 |
3.2 |
| PA0639 |
617.9 |
209.7 |
0.008 |
3.0 |
| PA0640 |
142.0 |
55.6 |
0.008 |
2.6 |
| PA0641 |
509.7 |
102.0 |
0.008 |
5.0 |
| PA0642 |
45.1 |
16.2 |
0.008 |
2.8 |
| PA0643 |
135.5 |
65.7 |
0.008 |
2.1 |
| PA0644 |
210.3 |
119.3 |
0.008 |
1.8 c |
| PA0645 |
222.9 |
88.8 |
0.008 |
2.5 |
| PA0646 |
158.0 |
64.2 |
0.008 |
2.5 |
| PA0647 |
50.84 |
39.95 |
0.341 b |
1.3 c |
| PA0648 |
143.4 |
94.8 |
0.024 |
1.5 c |
| PA1151 (imm2) |
34.88 |
71.58 |
0.008 |
-2.1 |
|
aThe fold change is a positive number when the expression level in the experiment increased compared to the control and is a negative number when the expression level in the experiment declined. b The p value is higher than 0.05. c The fold change is less than 2. | ||||
Chang et al. BMC Genomics 2005 6:115 doi:10.1186/1471-2164-6-115 |
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