Table 1

cDNA microarray data sets used in the study

Data set

Reference

# Rep

# Genes

Tissue type

Description

Hybridization


A

Smith et al. 2003

20

15,592

Human liver

Paired HCC tumor vs adjacent non-tumor

Direct hyb between tumor and non tumor

B

Lapointe et al. 2004

41

38627

Human prostate

Paired prostate tumor vs adjacent non-tumor

Indirect hyb using common reference

C

Chen et al 2002

48

22618

Human liver

Paired HCC+HBV vs HBV

Indirect hyb using common reference

D

Pritchard et al. 2001

6

5281

Mouse liver and kidney

Paired liver vs kidney

Indirect hyb using common reference

E

Zhao et al. 2004

36 ductal + 21 lobular

44549

Human breast

lobular and ductal tumor tissue

Indirect hyb using common reference

F

NA

6

13, 056

Mouse liver

One third vs two thirds hepatectomy

Indirect hyb using individual baseline

G

Callow et al. 2000

8

5548

Mouse liver

ApoAI knock-out vs normal

Indirect hyb using common reference (pool)


Wei et al. BMC Genomics 2004 5:87   doi:10.1186/1471-2164-5-87

Open Data