Figure 1.

Histogram of standard deviation The X axis is the standard deviation, and the Y axis is the percentage of genes that has standard deviation below the value of X. All data sets were normalized by spatial lowess; (A) Data set A-standard deviation of log ratio of two groups (direct hybridization); data set B-D standard deviation of the difference of log (sample/reference) of the two groups (indirect hybridization); (B) Data sets E-G common standard deviation of (sample/reference) of the two independent groups (indirection hybridization).