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EST loci used in a population-level PCR amplification screen in A. ordinarium |
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| Locus ID |
Forward Primer 5' to 3' |
Reverse Primer 5' to 3' |
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| 1F8 |
AAGAAGGTCGGGATTGTGGGTAA |
CAGCCTTCCTCTTCATCTTTGTCTTG |
| 1H3 |
GGCAAATGCTGGTCCCAACACAAA |
GGACAACACTGCCAAATACCACAT |
| 2C8 |
GCAAGCACCAGCCACATAAAG |
GGCCACCATAACCACTCTGCT |
| 3B10 |
TCAAAACGAATAAGGGAAGAGCGACTG |
TTGCCCCCATAATAAGCCATCCATC |
| 5E7 |
ACGCTTCGCTGGGGTTGACAT |
CGGTAGGATTTCTGGTAGCGAGCAC |
| 5F4 |
CCGAGATGAGATTTATAGAAGGAC |
TAGGGGAAGTTAAACATAGATAGAA |
| 6A3 |
GTTTATGAAGGCGAGAGGGCTATGACCA |
ATCTTGTTCTCCTCGCCAGTGCTCTTGT |
| 6B1 |
TGATGCTGGCGAGTACAAACCCCCTTCT |
TTTACCATTCCTTCCCTTCGGCAGCACA |
| 6B3 |
ACCACGTGCTGTCTTCCCATCCAT |
ACGAAGCTCATTGTAGAAGGTGTG |
| 6B4 |
CCCACGATGAATTGGAATTGGACAT |
CTGCCTGCCAGACCTACAGACTATCGT |
| 6C4 |
ATGGCGCCAAAGTGATGAGTA |
GGGCCAGGCACACGACCACAAT |
| 6D2 |
ATCAAGGCTGGCATGGTGGTCA |
GGGGGTCGTTCTTGCTGTCA |
| 6H8 |
GAAGAAGACAGAAACGCAGGAGAAAAAC |
CGGGCGGGGGCGGGTCACAGTAAAAC |
| BL005B_A01.5.1 |
GACAGGTCATGAACTTTTGAAAATAA |
AAAGTATATGTACCAAATGGGAGAGC |
| BL006A_G07.5.1 |
GATGTCCTCTCCACTATACAAGTGTG |
GTTTGACTTGTCACCACTTTATCAAC |
| BL012D_F02.5.1 |
ACAGCCAGAAATAGAAACTTTGAACT |
TGAAAGTATGTATTGTTTTCACAGGG |
| BL013C_E01.5.1 |
AGGATGAAATAATATGCTGTGCTTC |
ACCGTGATAAACTCCATCCCTT |
| BL014D_B11.5.1 |
AGCAAAACTCCTCTATGAATCTCG |
ATTGCACACTAAATAGGTGAATACGA |
| BL279A_G10.5.1 |
ATGGCAGGATGAAGAAAGACAT |
ATGCACTTTGGACCCACTGAG |
| Et.fasta.Contig1023.5.1 |
TGTGGTTATTGGACTACTTCACTCTC |
AAACGTCCATTTGACACTGTATTTTA |
| Et.fasta.Contig1166.5.1 |
GAATGAAGAGAAAATGTTTTGAAGGT |
GCACAGTATTGGCTATGAGCAC |
| Et.fasta.Contig1311.5.1 |
AGAAAACTGTGTCAAGCTTATTTTCC |
CAACTTAGTGTTCACATTTCTGAGGT |
| Et.fasta.Contig1335.5.1 |
CCACTTATGGTAGTTCCCACTTTTAT |
GCTAAAGAATACCAAGAACCTTTGAC |
| Et.fasta.Contig1381.5.1 |
GTCACAGGTATAACATTGAAAGGATG |
TAAATGAATCAAACATTGAAGAGAGC |
| Et.fasta.Contig1459.5.1 |
ATAACAAGGACATGTTCTGCTGG |
CTAGCAGAACCCTGTATAGCCTG |
| Et.fasta.Contig1506.5.1 |
AGGATATCCGCTCAGAAATATGAAG |
CTGACCACTTGCAAAACTTACTACCT |
| Et.fasta.Contig1578.5.1 |
CCTAGAACATTACCAAAACAGACTCA |
AATGAAGAAGTATTGCATGTGAGAAC |
| Et.fasta.Contig1647.5.1 |
GTACAACGTCAGGCAAAGCTATTCT |
ATCTCCAACACCGTGGCTAAT |
| Et.fasta.Contig1717.5.1 |
GAACTTGTTGGCAGGTTTCTCTT |
CTAGTGATAGGTTGGACATACCAGAG |
| Et.fasta.Contig1796.5.1 |
TGTGGGTATGTATATGGCTAACTTGT |
AGATTTTATGTGCTACTGCATTTACG |
| Et.fasta.Contig1908.5.1 |
CTCATGACTTAATTGCTGTTCTTCG |
ATAACCATTCTGAGGTTTTGAGTTG |
| Et.fasta.Contig1941.5.1 |
ATCTCCTGCTTCATCTCTTGATTTAT |
TAACAGATTTAATAAACGTCCCCTTC |
| Et.fasta.Contig1943.5.1 |
AGTACGATGAATCTGGTCCTTCAAT |
CCACAATACTGACATACTCTGGTCTT |
| Et.fasta.Contig325.5.1 |
GTGAAGTCAGTGAGTAAAGTCCATGT |
CTAGGATACCAGTGGGAGAGTGTAAT |
| Et.fasta.Contig330.5.1 |
GTCATCACCTCCACTACTTCACAAG |
TTTTGGCACTGTAAGATTCTATGAAC |
| Et.fasta.Contig536.5.1 |
CCTTAGGTAGAACAGACTGAAGCAG |
GAAACATGAAACTGGACTTGTTTTAG |
| Et.fasta.Contig917.5.1 |
GGATGCAGATTCTTCCTATTTTACTC |
CTGGTCACTTTACTTGTTTTCAGTGT |
| Et.fasta.Contig926.5.1 |
TTCATCACATTCTACTTCACAAATCA |
CTAGGCAAGCAAGCTTTCTAATAGTT |
| Et.fasta.Contig93.5.1 |
GAATAAAAGCAACAATTGCAGAGTTA |
CTCGACTCCTTCTACGATCTCTACTC |
| Et.fasta.Contig990.5.1 |
GTTTAGGTTAGTATGAAGGATCCCAA |
TGCCAGTACTCACCAATTAGTAAAAG |
| G1-C12 |
CCCAAATCCAGGAGTTCAAA |
TGGGACCTGGGGCTTCATT |
| G1-C13 |
TTGCCCGAGAAAAGGAAGGACATA |
CAAGGGTGGGTGAGGGACATC |
| G1-C5 |
F-CACTGTTGACTTGGGTTATGTTATT |
CTGCTCCTAGGGTTTGTGAAG |
| G1-C7 |
CCCGTGTGGCTGGCTTGTGC |
TCGGCTACTTTGGTGTTTTTCTCCCTCAT |
| G1-C9 |
TGGTCCGGCAACAGCATCAGA |
GCTTTTCGGTATTCAACGGCAGAGTG |
| G1-C9 |
TGGTCCGGCAACAGCATCAGA |
GCTTTTCGGTATTCAACGGCAGAGTG |
| G1-D5 |
AGACCCTTGCTGTGTAACTGCT |
GACTGGGACTGACTTCTATGACG |
| G1-D6 |
CAGCGTGCCCACCCGATAGAA |
TCCCAAAAAGTAAAATGTGCAAAGAAAA |
| G1-D7 |
CAGCGGTGGAAATGACAAACAGG |
CCAAGACGACGAGGAACGGTATT |
| G1-E12 |
CAACCATGAGAGGAGGCCAGAGAAC |
AAAACAGCACTACCTACAAAACCCTATT |
| G1-F1 |
TTAGTTTGGGTGCAGACAGGA |
GGTGCTCAACAACAAATCAACT |
| G1-F20 |
TCCCCAACAACTCCAGCAGAT |
GGAAACCACCTAGACGAAAAATG |
| G1-I18 |
CATGTTTGTGGGTGTGGTGAA |
AAAAGCGGCATCTGGTAAGG |
| G1-I19 |
ACCCAGACCTGTCCACCTCA |
GAACAGCTCTCCAATCCACAAG |
| G1-I21 |
CCAAGCGAAGGAGGCGTGTG |
CATGTGGCTCTTTGTTTCTGGA |
| G1-I5 |
TAATCGTGTTTGGTGGCATCCTTGAGTC |
AGCAGCAGTTCCATTTTCCCACACCA |
| G1-I8 |
ACCTGCAGTGGGCTAAGACC |
ATGGAAATAATAAAATAAAATGTT |
| G1-J10 |
CGTTCGCTTTGCCTGCCACA |
GGCTCTTCCCCGGTCGTCCAC |
| G1-J17 |
AGCGCCTTCTACACGGACAC |
TATGCCCCAATTACTCTTCTGC |
| G1-J2 |
TACAGTAACTATGCCAAGATGAAATG |
CAATATGGATAATGGCTGTAGACC |
| G1-J20 |
ATCCTCCAAGCTCACTACAACA |
CCAGCCCCTTCCCAAACAG |
| G1-J9 |
CTGTCATTGCCTGCATCGGGGAGAAG |
TGTTGAGGGGAAGCAGTTTTG |
| G1-K2 |
GCTTTCGCCTTTGACACCTC |
GGCCGGACCATTGCTGAAGAAG |
| G1-L11 |
AAAGTGACCATCCAGTGCCCAAACCT |
CCGGCCGAAACTGACGAGATACATTAG |
| G1-L13 |
TCAGCTGCACTAGGTTTGTC |
CATTTTGATTTGCTCCATAA |
| G1-L19 |
GACAACCTTGAATCCTTTATG |
AGATGTTGGTTGGTGACTTAT |
| G1-L20 |
TGGGCATAGATGGCAAGGAAAAA |
CCCCCAGCATCTCGCATACAC |
| G1-L7 |
GTGCTACAGGAAGGAATGGATG |
TAGCACAGGAACAGCCGACAATAA |
| G1-M14 |
CCGCTTGGACATGAGGAGAT |
TGGCAAAGAAACAGAACACAACTA |
| G1-M19 |
GAGAAGTAGTGTCCCGGCAGAAAC |
ATGGGTGAAAACTTAGGTGAAATG |
| G1-N9 |
GCGGGGCAATACATGACGTTCCACAG |
GACCCCCATCTCCGTTTCCCATTCC |
| G1-O1 |
GGGGTAGAGCACAGTCCAGTT |
TTGCAAGGCCGAAAAGGTG |
| G1-O12 |
GGAATTCCGGGGCACTACT |
TCGCGAGGACGGGGAAGAG |
| G1-O24 |
CGGCCTTCCTGCAGTACAACCATC |
TCGGCAACGTGAAGACCATA |
| G2-A11 |
GCCCCTGGAAGCTGTTGTGA |
GGGGTCCATCCGAGTCC |
| G2-A7 |
TTACCCCACAGACAAAATCAACACC |
GGCGGCCCCTCATAGCAC |
| G2-B1 |
GGGCCTAGTCCTGCTGGTC |
CAAAGAGTGCGGAGAAATGG |
| G2-B8 |
CAACATGCGACCACTATAGCCACTTCCT |
CGCCACCGCCACCACCACA |
| G2-C2 |
TTTGCAGGAAGAGTCATAACACAG |
GTCAACAACACCCTTTTCCCTTCCT |
| G2-D1 |
GCAGGTCGGCAAGAAGCTAAAGAAGGAA |
AGGGTTGGTTTGAAAGGATGTGCTGGTAA |
| G2-E17 |
GGAGCACCAAATTCAAGTCAG |
CGTCCCCGGTCAATCTCCAC |
| G2-E19 |
CCAGTTTGAGCCCCAGGAG |
TCGCGGCAGTCAAGAGGTC |
| G2-F17 |
TATCCTCTTATTGCTGCATTCTCCTCAC |
AGTACGGCCGTTCACCATCTCTG |
| G2-F2 |
CACACCACAGACGCATTGAC |
TCCCCAGCCTGTGTAGAAC |
| G2-G13 |
GGGAGGGGAGAAGGCTACCA |
ATACACGGCTTCCATGCTTCTTCTT |
| G2-G15 |
CCACGGCCCCACATCCAGC |
TCCCGCAGAATTTCCGTATCCAT |
| G2-G21 |
TCCAAGAGGGTGTGAGGTGAAC |
AAAGCCATGCGAAGCGGAAGAC |
| G2-G23 |
GGTTTGGTACTTCAGCGGATGT |
CCAAAGCCTGTACTATGCGAAAAG |
| G2-G5 |
CGGTCCCTACTGTGGTCTATGGTTTTCA |
GGCTCTGCATATCCTCGGTCACACTTCC |
| G2-G6 |
CCCATGGCTGCAAGGATTACG |
CAGGGGTTGTTGGGAGGCAGTGT |
| G2-H18 |
TTGTCAAATGGGCGAGTTCA |
TGTTTTGCACCCAGTTTTTG |
| G2-I18 |
GATCTCCTCAGGTCTCTTTCA |
GATTATGGGCCGGTGTCTCT |
| G2-I23 |
TGACTTTCCCAATGTGAGCAGAC |
CAGAGGTGGTGTTACAGCAGCAGTTT |
| G2-J12 |
CCTCTTGTCCCAGTGCCAGTG |
TCCAGGGATCCGAAACAAAG |
| G2-J21 |
CCGCCTCAGCCTGTTTCTCTACTTTT |
CTTTGAATTTCTGCTTTTGGTGCTCTGC |
| G2-K12 |
ACATTAGTCCTGGTTACGAGAGC |
AAAGGGCAGTCCAGCATTGA |
| G2-K2 |
CTGCCCAAGAAGACCGAGAGCCACAAG |
AGCGCCCCCTGCACCAAAATCA |
| G2-L16 |
CCAAGGGTAGGAGAACAAGACA |
ATGGCATGCTGGGAAATCA |
| G2-L21 |
GAATCTAGGTCCAAGCAGTCCCATCT |
GACCATCACACCACTACCCACACTCA |
| G2-L3 |
TGAAAGAGGCCAGAAACAAGTAG |
TTCCCAAGGTCTCCATAACAAT |
| G2-L4 |
TGGCCAAGAAGATGAAACAGGAAGAGGAG |
TGGCAAAGGACACGACGCAGAG |
| G2-M14 |
CGGCCTCCTCGACGCATACG |
CCAGGCCGGCCCATTGTTC |
| G2-M24 |
ACGGAGCACGGTCAGATTTCACG |
CCCGGCTGGCTCTTCTTGCTCTT |
| G2-M3 |
CGATCCGCATTGAACGAGT |
TGTGGCAGGAAGGAGAAGG |
| G2-N2 |
CGTGTTTTCCTCCTATGTCGACTTCTTTG |
ACGTGCTCTGCCTTTCTTGATCTTGTGTT |
| G3-D7 |
AGGATTTCTTGGCCGGTGGAGTGG |
GAAGTTGAGGGCCTGGGTGGGGAAGTA |
| NT001D_E08.5.1 |
AGAAGTTCCTAGATGAGTTGGAGGAG |
AATTAATTTCCTAAACCAGGTGACAG |
| NT010B_E09.5.1 |
GAAGAGGTCCTAAAATATCAAGATGC |
ATGATAGACTTCGTCCTTGTCATAGA |
| NT014D_E01.5.1 |
AAAGAAGTCCCGCATCTAACCT |
ATTAAATATGAGAAGATGTGTGCAGG |
| V2_p1_b8 |
AGTCACTGTGTTACATTATCACCCAC |
ATAATTATACACTGCGGTCTGCATCT |
| V2_p1_c5 |
AGTACCTGTTCGACAAGCACAC |
TGAGAACATAGACAAGTTAACATACACC |
| V2_p1_d10 |
GAGATAGAAAGGCTGCATAAAGAAAT |
TATGTTTCAACAATGTACAGGAAACC |
| V2_p1_d4 |
CACCAGAACAAGCTGTATTTTTATGT |
TGGTTTGCATCATATATTAAAGGGTA |
| V2_p1_g7 |
GACTTCAAGCACATTGGGAAAC |
ATTGTAAACTTGATAGGCTGGTGAG |
| V2_p2_g6 |
AGAATTCCCAATAGCACCTGAAAT |
CACTTGGTAAATACATACACACAGCA |
| V2_p2_h2 |
CTTTTTGGCCTGGTCTTTTTG |
AGATTCTTCAGACTCGTCCTTCTTT |
| V2_p3_a5 |
TTTACACAGAAACCTTGTTTATTTGGC |
TTTAAGGATGCTTAGAGGCAAAGTATT |
| V2_p3_b1 |
AGTCACTGTGTTACATTATCACCCAC |
TATACACTGCGGTCTGCATCTACT |
| V2_p5_b3 |
AATGGGATGAAGAGCGAGAAT |
CTGCCCCATTGACATTTACCTA |
| V2_p5_h3 |
CCTTCAGACGAAAACAGCACTAAG |
TACAGTGTATGAGAGCCCAATATTTC |
| V2_p6_a4 |
AGAAATACATCAAATATCGGGTGG |
AAAAAGGACAATGTTCAGCTCTCT |
| V3_p1_a21 |
ACCAAGTTCTTGGAAAGTGGTG |
CTTAGTGTCTCCTGGGTTTGAATAG |
| V3_p1_b13 |
GTCTTGGTACTCAATGAAGGAGATG |
TCAATCTGATGAAGAGTTTACATGTCT |
Putta et al. BMC Genomics 2004 5:54 doi:10.1186/1471-2164-5-54 |
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