|
Ambystoma contigs that show sequence similarity to rat spinal cord injury genes. |
||
| Ambystoma Contig ID |
RAT cDNA clone |
E-value |
|
|
||
| MexCluster_7440_Contig1 |
gi|1150557|c-myc, exon 2 |
E-29 |
| MexCluster_4624_Contig1 |
gi|1468968| brain acyl-CoA synthtase II |
E-09 |
| TigCluster_4083_Contig1 |
E-09 |
|
| TigSingletonClusters_Salamander_4_G20_ab1 |
gi|1552375| SKR6 gene, a CB1 cannabinoid recept. |
E-08 |
| MexSingletonClusters_NT009B_B04 |
gi|17352488| cyclin ania-6a |
E-46 |
| TigCluster_3719_Contig1 |
E-114 |
|
| TigCluster_8423_Contig1 |
gi|1778068| binding zyginI |
E-102 |
| TigCluster_7064_Contig1 |
gi|1836160| Ca2+/calmodulin-dependent |
E-20 |
| MexCluster_3225_Contig1 |
gi|1906612| Rattus norvegicus CXC chemokine |
E-68 |
| TigSingletonClusters_Salamander_13_F03_ab1 |
E-38 |
|
| MexSingletonClusters_BL285B_A06 |
gi|203042| (Na+, K+)-ATPase-beta-2 subunit |
E-63 |
| TigCluster_6994_Contig1 |
E-65 |
|
| MexSingletonClusters_BL014B_F12 |
gi|203048| plasma membrane Ca2+ ATPase-isoform 2 |
E-112 |
| TigSingletonClusters_Salamander_5_F07_ab1 |
E-92 |
|
| MexCluster_1251_Contig1 |
gi|203167| GTP-binding protein (G-alpha-i1) |
E-110 |
| TigSingletonClusters_Salamander_3_P14_ab1 |
E-152 |
|
| TigSingletonClusters_Salamander_22_B01_ab1 |
gi|203336| catechol-O-methyltransferase |
E-47 |
| TigSingletonClusters_Salamander_17_N04_ab1 |
gi|203467| voltage-gated K+ channel protein (RK5) |
E-08 |
| MexSingletonClusters_v1_p8_c16_triplex5ld_ |
gi|203583| cytosolic retinol-binding protein (CRBP) |
E-77 |
| TigCluster_6321_Contig1 |
E-18 |
|
| MexCluster_5399_Contig1 |
gi|204647| heme oxygenase gene |
E-67 |
| TigCluster_2577_Contig1 |
E-67 |
|
| MexCluster_4647_Contig1 |
gi|204664| heat shock protein 27 (Hsp27) |
E-83 |
| TigSingletonClusters_Salamander_12_M05_ab1 |
E-51 |
|
| MexSingletonClusters_BL285C_F02 |
gi|205404| metabotropic glutamate receptor 3 |
E-41 |
| TigSingletonClusters_Salamander_2_B24_ab1 |
gi|205508| myelin/oligodendrocyte glycoprotein |
E-26 |
| TigCluster_5740_V2_p10_M20_TriplEx5ld_ |
gi|205531| metallothionein-2 and metallothionein 1 |
E-08 |
| TigSingletonClusters_V2_p5_A2_TriplEx5ld_ |
gi|205537| microtubule-associated protein 1A |
E-59 |
| MexCluster_1645_Contig1 |
gi|205633| Na, K-ATPase alpha-2 subunit |
E-149 |
| TigSingletonClusters_Contig328 |
0 |
|
| TigSingletonClusters_Contig45 |
gi|205683| smallest neurofilament protein (NF-L) |
E-63 |
| MexSingletonClusters_NT016A_A09 |
gi|205693| nerve growth factor-induced (NGFI-A) |
E-95 |
| TigSingletonClusters_I09_Ag2_p9_K24_M13R |
E-24 |
|
| MexSingletonClusters_NT007A_E07 |
gi|205754| neuronal protein (NP25) |
E-64 |
| TigCluster_7148_Contig1 |
E-57 |
|
| MexCluster_9504_Contig1 |
gi|206161| peripheral-type benzodiazepine receptor |
E-73 |
| MexSingletonClusters_BL016B_B02 |
gi|206166| protein kinase C type III |
E-36 |
| TigCluster_981_Contig1 |
E-27 |
|
| MexSingletonClusters_nm_19_k3_t3_ |
gi|206170| brain type II Ca2+/calmodulin-dependent |
E-117 |
| MexSingletonClusters_v11_p42_j20_t3_049_ab1 gi|207138| norvegicus syntaxin B |
1e-079 |
|
| MexSingletonClusters_nm_14_h19_t3_ |
gi|207473| neural receptor protein-tyrosine kinase |
E-40 |
| TigSingletonClusters_Contig336 |
E-34 |
|
| TigSingletonClusters_E10_Ag2_p18_O19_M13 |
gi|2116627| SNAP-25A |
E-123 |
| MexCluster_211_Contig1 |
gi|220713| calcineurin A alpha |
E-63 |
| TigSingletonClusters_Salamander_7_K14_ab1 |
E-87 |
|
| MexSingletonClusters_NT014A_G03 |
gi|220839| platelet-derived growth factor A chain |
E-21 |
| TigSingletonClusters_Salamander_9_M15_ab1 |
E-56 |
|
| TigSingletonClusters_Salamander_19_M06_ab1 |
gi|2501807| brain digoxin carrier protein |
E-55 |
| MexSingletonClusters_Contig100 |
gi|2746069| MAP-kinase phosphatase (cpg21) |
E-108 |
| TigSingletonClusters_Salamander_11_A16_ab1 |
E-70 |
|
| MexCluster_8345_Contig1 |
gi|2832312| survival motor neuron (smn) |
E-40 |
| TigCluster_8032_Contig1 |
E-49 |
|
| MexCluster_3580_Contig1 |
gi|294567| heat shock protein 70 (HSP70) |
0 |
| TigCluster_8592_Contig2 |
E-161 |
|
| TigSingletonClusters_Salamander_17_N08_ab1 |
gi|2961528| carboxyl-terminal PDZ |
E-10 |
| MexSingletonClusters_BL286C_D09 |
gi|298325| sodium-dependent neurotransmitter tran. |
E-12 |
| TigSingletonClusters_Contig95 |
E-22 |
|
| MexSingletonClusters_Contig461 |
gi|2996031| brain finger protein (BFP) |
E-08 |
| TigSingletonClusters_Salamander_11_O19_ab1 |
E-23 |
|
| TigSingletonClusters_E16_Ag2_p8_O20_M13R |
gi|3135196| Ca2+/calmodulin-dependent |
E-33 |
| MexSingletonClusters_Contig188 |
gi|3252500| CC chemokine receptor protein |
E-15 |
| MexCluster_6961_Contig1 |
gi|3319323| suppressor of cytokine signaling-3 |
E-08 |
| MexSingletonClusters_nm_14_p15_t3_ |
gi|349552| P-selectin |
E-16 |
| TigCluster_218_Contig2 |
E-99 |
|
| MexSingletonClusters_Contig506 |
gi|3707306| Normalized rat embryo, cDNA clone |
E-14 |
| TigSingletonClusters_I16_Ag2_p5_N7_M13R |
gi|3711670| Normalized rat muscle, cDNA clone |
E-35 |
| MexSingletonClusters_V1_p1_a10_Triplex5Ld |
gi|3727094| Normalized rat ovary, cDNA clone |
E-15 |
| TigSingletonClusters_v2_p1_D20_triplex5ld |
E-16 |
|
| MexSingletonClusters_NT005B_F02 |
gi|3811504| Normalized rat brain, cDNA clone |
E-35 |
| TigSingletonClusters_Salamander_22_I04_ab1 |
E-34 |
|
| TigSingletonClusters_Ag2_p34_N23_M13R |
gi|405556| adenylyl cyclase-activated serotonin |
E-17 |
| TigSingletonClusters_Salamander_1_H02_ab1 |
gi|4103371| putative potassium channel TWIK |
E-22 |
| MexCluster_4589_Contig1 |
gi|4135567| Normalized rat embryo, cDNA clone |
E-32 |
| TigSingletonClusters_Contig220 |
E-09 |
|
| TigCluster_4093_Contig1 |
gi|4228395| cDNA clone UI-R-A0-bc-h-02-0-UI |
E-104 |
| MexSingletonClusters_nm_21_2_m7_t3_ |
gi|425471| nuclear factor kappa B p105 subunit |
E-22 |
| TigCluster_8535_Contig1 |
E-11 |
|
| MexSingletonClusters_v6_p1_j6_triplex5_1ld_ |
gi|430718| Sprague Dawley inducible nitric oxide |
E-13 |
| TigSingletonClusters_Salamander_15_D22_ab1 |
E-41 |
|
| MexCluster_3498_Contig1 |
gi|436934| Sprague Dawley protein kinase C rec. |
0 |
| TigCluster_6648_Contig1 |
0 |
|
| MexSingletonClusters_BL279A_B12 |
gi|464196| phosphodiesterase I |
E-49 |
| TigSingletonClusters_Salamander_25_P03_ab1 |
E-75 |
|
| MexCluster_8708_Contig1 |
gi|466438| 40kDa ribosomal protein |
E-168 |
| TigCluster_5877_Contig1 |
E-168 |
|
| MexSingletonClusters_nm_14_a9_t3_ |
gi|493208| stress activated protein kinase alpha II |
E-51 |
| TigSingletonClusters_Salamander_11_A13_ab1 |
gi|517393| tau microtubule-associated protein |
E-44 |
| TigSingletonClusters_Salamander_12_J14_ab1 |
gi|55933| c-fos |
E-26 |
| MexSingletonClusters_nm_21_2_l13_t3_ |
gi|56822| major synaptic vesicel protein p38 |
E-39 |
| TigCluster_2065_Contig1 |
E-50 |
|
| MexCluster_10965_Contig1 |
gi|56828| nuclear oncoprotein p53 |
E-75 |
| TigCluster_5315_Contig1 |
E-66 |
|
| MexCluster_4245_Contig1 |
gi|56909| pJunB gene |
E-50 |
| TigSingletonClusters_G05_Ag2_p9_G8_M13R |
E-09 |
|
| MexSingletonClusters_NT013D_C12 |
gi|56919| region fragment for protein kinase C |
E-33 |
| TigSingletonClusters_Salamander_21_H19_ab1 |
E-24 |
|
| MexCluster_9585_Contig1 |
gi|57007| ras-related mRNA rab3 |
E-61 |
| TigCluster_4885_Contig1 |
E-63 |
|
| TigSingletonClusters_Salamander_1_M03_ab1 |
gi|57238| silencer factor B |
E-13 |
| MexSingletonClusters_NT008B_D05 |
gi|57341| transforming growth factor-beta 1 |
E-13 |
| TigSingletonClusters_Salamander_24_I16_ab1 |
E-20 |
|
| MexCluster_9533_Contig1 |
gi|57479| vimentin |
0 |
| TigCluster_5768_Contig1 |
0 |
|
| MexSingletonClusters_BL283B_A11 |
gi|596053| immediate early gene transcription |
E-12 |
| TigSingletonClusters_Salamander_13_J19_ab1 |
E-16 |
|
| MexSingletonClusters_v6_p4_j2_triplex5_1ld_ |
gi|790632| macrophage inflammatory protein-1alpha |
E-22 |
| TigCluster_2146_Contig1 |
gi|951175| limbic system-associated membrane prot. |
E-11 |
| MexSingletonClusters_v11_p54_o4_t3_ |
gi|971274| neurodegeneration associated protein 1 |
E-09 |
| TigSingletonClusters_Salamander_2_J12_ab1 |
E-11 |
|
Putta et al. BMC Genomics 2004 5:54 doi:10.1186/1471-2164-5-54 |
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