Table 2 |
||||
|
Description of acronyms: Description and Pfam/SMART accession numbers (if available) of acronyms used throughout the text and in Table S1 are given. Column "conserved" refers to classification in conserved ZF-families (ZF-fam) and/or non-finger domains (NFD). |
||||
|
Acronym |
Description |
Pfam |
SMART |
conserved |
|
|
||||
|
ANK |
Ankyrin repeat |
PF00023 |
SM00248 |
NFD |
|
C3H |
C3H1 zinc finger |
PF00642 |
SM00356 |
NFD |
|
CHROMO |
CHRomatin Organisation MOdifier |
PF00385 |
SM00298 |
NFD domain |
|
DNAJ |
Dnaj molecular chaperone domain |
PF00226 |
SM00271 |
NFD/ZF-fam |
|
DUF537 |
Plant family of unknown function |
PF04396 |
- |
NFD |
|
DUF627 |
Plant family of unknown function |
PF04781 |
- |
NFD |
|
DUF629 |
Plant family of unknown function |
PF04780 |
- |
NFD |
|
E7 |
E7cadherine binding protein family |
- |
- |
ZF-fam |
|
EXO3 |
Exonuclease domain |
PF00929 |
SM00479 |
NFD |
|
FZFnew |
New ZFP family FZF |
- |
- |
ZF-fam |
|
G-patch |
G-patch domain |
PF01585 |
SM00443 |
NFD |
|
HLH |
Helix-loop-helix domain |
PF00010 |
SM00353 |
NFD |
|
IPPT |
IPP transferase family |
PF01715 |
- |
NFD/ZF-fam |
|
JmjC |
Jumonji domain, C-terminal part |
PF02373 |
SM00558 |
NFD |
|
JmjN |
Jumonji domain, N-terminal part |
PF02375 |
SM00545 |
NFD |
|
KIN17 |
KIN17 family |
- |
- |
ZF-fam |
|
KOW |
Kyprides, Ouzounis, Woese motif |
PF00467 |
SM00739 |
NFD |
|
MBD |
Methyl-CpG binding domain |
PF01429 |
SM00391 |
NFD |
|
OTU |
OTU-like cysteine protease |
PF02338 |
- |
NFD |
|
PHD |
PHD zinc finger |
PF00628 |
SM00249 |
NFD |
|
PreSet |
N-terminal to some SET domains |
- |
SM00468 |
NFD |
|
PRMT3 |
Ribosomal protein L11 methyl-transferase (PrmA)family |
PF06325 |
- |
NFD/ZF-fam |
|
PUG |
Domain in protein kinases |
- |
SM00580 |
NFD |
|
RING |
zf-C3HC4 or RING finger |
PF00097 |
SM00184 |
NFD |
|
RRM |
RNA recognition motif |
PF00076 |
SM00360 |
NFD |
|
SAP61 |
Splicosome associated protein 61/PRP9 family |
- |
- |
ZF-fam |
|
SAP62 |
Splicosome associated protein 62/PRP11 family |
- |
- |
ZF-fam |
|
SAS |
MOZ/SAS family |
PF01853 |
- |
NFD/ZF-fam |
|
SE |
Serrate family |
- |
- |
ZF-fam |
|
SET |
SET domain |
PF00856 |
SM00317 |
NFD |
|
TF3A |
Transcription factor IIIA family |
- |
- |
ZF-fam |
|
U1-ZF |
U1-like zinc finger |
PF06220 |
SM00451 |
NFD |
|
UBA |
UBA/TS-N domain (ubiquitin associated domain) |
PF00627 |
SM00165 |
NFD |
|
UBX |
UBX domain |
PF00789 |
SM00166 |
NFD |
|
UPF0023 |
Uncharacterized protein family |
PF01172 |
- |
NFD |
|
VEF |
VRN2-EMF2-FIS2 family |
- |
- |
ZF-fam |
|
YY1 |
Ying Yang 1 family |
- |
- |
ZF-fam |
|
ZF-AN1 |
AN1-like zinc finger |
PF01428 |
SM00154 |
NFD |
|
ZP207SF |
ZFP207 family |
- |
- |
ZF-fam |
|
|
||||
|
Englbrecht et al. BMC Genomics 2004 5:39 doi:10.1186/1471-2164-5-39 |
||||
