Table 4

Cross-platform Comparison of Read Mapping to B. anthracis Sterne
Platform #Replicates Reads mapped (low) Reads mapped (med) Reads mapped (high) Fraction of reference covereda Detected by qPCR?
PGM 2 29,534/15,676 7,689/4,286 247/178 .12/.09 Y
Roche-454 2 384/376 249/240 65/56 .01/.01 Y
MiSeq 2 10,415/41,242 3,024/9,985 1,633/7,930 .07/.19 Y

a: Fraction of reference covered using high stringency mapping parameters as defined in Methods.

Frey et al.

Frey et al. BMC Genomics 2014 15:96   doi:10.1186/1471-2164-15-96

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