Table 2

Cross-platform comparison of read mapping to Influenza A H1N1
Platform #/Replicates Reads mapped (low) Reads mapped per 100,000a Reads mapped (med) Reads mapped in pairsa Fraction of reference covereda
PGM 1 3 11/20/ND .61/.80/ND 5/16/ND NA .07/.15/ND
PGM 2 3 21/19/18 .87/1.3/.86 14/11/10 NA .12/.09/.14
Roche 2 1/0 .17/0 0/0 NA .03/-
MiSeq 1 3 308/322/323 .82/.90/1.0 269/311/318 66/72/82 .79/.95/.80
MiSeq 2 3 811/942/912 2.2/2.4/2.2 741/934/914 296/216/248 .95/.95/.97

a: Reads mapped at low stringency.

Frey et al.

Frey et al. BMC Genomics 2014 15:96   doi:10.1186/1471-2164-15-96

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