Table 1

List of papaya miRNAs identified in this study
MiRNA family miR_sequence Strand Chromosome miR location
CpmiR397 UCAUUGAGUGCAGCGUUGAUGU - Supercontig_27 1548952..1548973
CpmiR398a UGUGUUCUCAGGUCACCCCUU + Supercontig_1 1672760..1672780
CpmiR398b UGUGUUCUCAGGUCGCCCCUG + Supercontig_34 1614486..1614506
CpmiR399a UGCCAAAGGAGAUUUGCCCGG + Supercontig_7 849330..849350
CpmiR399b UGCCAAAGGAGAUUUGCCCGG - Supercontig_7 855497..855517
CpmiR399c UGCCAAAGGAGAGUUGCCCUG + Supercontig_4 3751380..3751400
CpmiR403 UUAGAUUCACGCACAAACUCG n/a n/a n/a
CpmiR894 CGUUUCACGUCGGGUUCACC n/a n/a n/a
CpmiR2111 UAAUCUGCAUCCUGAGGUUUA + Supercontig_171 301214..301234
CpmiR2910 UAGUUGGUGGAGCGAUUUGUC + Supercontig_0 2421938..2421958
CpmiR-novel_36 UGGUCAACUUCACUAAUGCUUU + Supercontig_140 285663..285642
CpmiR-novel_37 AGAUAAAUCAGAGGAUCUAACC + Supercontig_27 1714759..1714738
CpmiR-novel_38 UUGCCAUUGCUGUCAUCAUUG - Supercontig_26 1264911..1264891
CpmiR-novel_39 UUCGCCAGCCAUUCACAAAAU - Supercontig_67 294009..293989
CpmiR-novel_40 UGCAGUAUCUGUAGCAUCAGC + Supercontig_1867 3234..3214
CpmiR-novel_41 UUAUGCAGAUACCCGGAGGAG + Supercontig_2379 8824..8804
CpmiR-novel_42 CAGAGGAGGAGAUGAAGAGGGA - Supercontig_609 25591..25570
CpmiR-novel_43 UAAGACAAAGCCUACAACAAC - Supercontig_92 867729..867709
CpmiR-novel_44 UGGGAUCCAGUGCAUUAGUGC + Supercontig_241 21475..21455
CpmiR-novel_45 AUUGGAGGACUUUGGGGGAGC - Supercontig_282 4156..4136
CpmiR-novel_46 UCUUGCAAGCUGCUUAGAUCA - Supercontig_130 392538..392518
CpmiR-novel_47 UUUCUACCCACCUUUACCUCCGUG - Supercontig_425 30640..30617
CpmiR-novel_48 CAGAAGUAAAGGUUGGUAGAAAA - Supercontig_77 529407..529385
CpmiR-novel_49 UUUUGGGACACGUGCAGGUAC + Supercontig_26 75358..75338
CpmiR-novel_50 CUGCGUAUAAAUUUUGCUCCG + Supercontig_271 79608..79588
CpmiR-novel_51 UUUCCAAAUUCUCUCGUACCGA + Supercontig_65 875942..875921
CpmiR-novel_52 AGGCGCACUGUGAAUCGUAUUCGG + Supercontig_33 742481..742458
CpmiR-novel_53 AUCUGGGCCGUCCGUGCGCAC - Supercontig_74 405778..405758
CpmiR-novel_54 UACCGGACGAAGUAUCGAGACGAU - Supercontig_246 189341..189318

The novel miRNAs are named contiguous from our previous report [32].

Aryal et al.

Aryal et al. BMC Genomics 2014 15:20   doi:10.1186/1471-2164-15-20

Open Data