Figure 5.

Spatial distribution of MC and LD. A. A colored density plot of the MC values and the number of fragments. The x-axis represents the co-ordinates of heterozygous sites. The actual locations of the sites in genome coordinates are shown by thin black diagonal lines and the black horizontal line represents a 10-11 megabase region of chromosome 20. The upper densities represent the connectivity values. The lower densities represent the number of fragments spanning the pair sites. B. A colored density plot of the precisions (upper) and the absolute normalized linkage disequilibrium |D'| (lower) for the same region.

Matsumoto and Kiryu BMC Genomics 2013 14(Suppl 2):S5   doi:10.1186/1471-2164-14-S2-S5