Table 1

Evaluation of how the size of boundOfCoverage affects the initial solution.

c = 3

c = 5

c = 8

c = 10


10

0.708(<0.1)

0.753(<0.1)

0.764(0.14)

0.774(0.18)

12

0.728(<0.1)

0.785(<0.1)

0.794(0.15)

0.797(0.21)

15

0.776(0.30)

0.837(0.33)

0.841(0.36)

0.857(0.45)


There are 3 different sizes of boundOfCoverage, i.e. 10, 12 and 15, and 4 different coverage rates c, i.e. 3, 5, 8 and 10. The number outside each bracket refers to the average reconstruction rate under the corresponding parameter setting, while the one enclosed in the bracket refers to the average running time in seconds.

Deng et al. BMC Genomics 2013 14(Suppl 2):S2   doi:10.1186/1471-2164-14-S2-S2

Open Data