Table 3

Summary of conserved syntenic blocks between catfish linkage groups and zebrafish chromosomes
Group Total length spanned (Kb) No. of syntenies Ave. size of the synteny (Kb) Max. size of the synteny (Kb) N50 of the synteny (Kb) No. of genes involved Ave. gene number/synteny
LG1 39,522 105 361 1,997 1,276 577 6
LG2 11,105 54 206 942 340 202 5
LG3 26,165 93 281 1,475 519 439 5
LG4 21,282 65 327 2,091 854 335 6
LG5 36,292 80 454 3,189 964 503 8
LG6 36,722 102 360 2,835 810 570 7
LG7 21,884 48 456 2,341 984 319 8
LG8 26,601 92 289 3,269 631 434 5
LG9 27,314 66 414 3,702 932 431 8
LG10 15,589 41 380 3,247 709 277 9
LG11 26,953 72 374 4,995 1,121 475 8
LG12 22,483 79 285 2,731 521 389 6
LG13 29,613 78 380 2,363 707 472 8
LG14 13,468 43 313 2,631 749 231 6
LG15 27,758 78 356 2,466 632 453 8
LG16 36,037 105 343 1,803 684 535 5
LG17 35,452 92 385 1,651 658 464 6
LG18 19,451 68 286 1,536 526 333 6
LG19 20,872 36 580 3,201 1,604 269 9
LG20 31,788 73 435 3,800 844 456 9
LG21 23,200 56 414 3,730 835 315 6
LG22 28,266 69 410 2,233 842 431 7
LG23 11,486 47 244 977 465 221 5
LG24 24,625 46 535 2,529 1,075 363 10
LG25 23,276 79 295 1,539 759 407 6
LG26 18,055 46 393 3,541 803 256 7
LG27 15,045 35 430 2,465 1,103 204 7
LG28 26,602 63 422 2,382 1,010 389 8
LG29 5,860 32 183 705 345 126 5
Total 702,766 1,943 10,876

Jiang et al.

Jiang et al. BMC Genomics 2013 14:780   doi:10.1186/1471-2164-14-780

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