Table 5

Orthologs of Xcv 85–10 flagellar genes in genomes of xanthomonads
Xcv85-10 XalGPE PC73 Xac306 XacmF1 Xff4834R XccATCC 33913 XcmNCPPB 4381 Xcr756c XfaICPB10535 XgATCC19865 XooBLS256 XooPXO99a XvATCC35937 X. translucensD61454 X. translucenspv.translucensDSM 18974 X. translucenspv.graminisART-Xtg29
Gene Product
XCV1977 RNA polymerase sigma factor for flagellar operon FliA 1 1 1 1 1 1 1 1 1* 1 1 1 1 1 0
XCV1978 flagellar synthesis regulator FleN 1 1 1 1 1 1* 1 1 1 1 1 1 1 1 0
XCV1979 flagellar biosynthesis regulator FlhF 1* 1 1 1 1 1 1 0 1* 1 1 1* 1 1* 0
XCV1980 flagellar biosynthesis protein FlhA 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1981 flagellar biosynthesis protein FlhB 1* 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1982 sensor protein 0 1 1 1* 1 1* 1 1 1 1 1 0 0 0 0
XCV1983 sensor protein 0 1 1 1 1 0 1 1 1 1 1 1 1* 0 0
XCV1984 hypothetical protein XCV1984 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
XCV1985 sensor protein 0 1 1 0 1* 1 1* 1 1* 1* 1* 1 1* 1* 0
XCV1986 flagellar biosynthesis pathway component FliR 1* 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1987 flagellar biosynthesis pathway component FliQ 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0
XCV1988 flagellar biosynthesis protein FliP 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1989 flagellar biogenesis protein FliO 1* 1 1 1 1 1 1 0 1 1 1 1 1 1 0
XCV1990 flagellar motor switch/type III secretory pathway protein FliN 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1991 flagellar motor switch protein FliM 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1992 flagellar basal body-associated protein FliL 1* 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1993 flagellar hook-length control protein FliK 1* 1 0 1 1 1* 1* 1* 1 1 1 1* 1* 1* 0
XCV1994 flagellar biosynthesis chaperone FliJ 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1995 flagellar biosynthesis/type III secretory pathway ATPase FliI 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1996 flagellar biosynthesis/type III secretory pathway protein FliH 1* 1 1 1 1 1* 1 1 1 1 1 1 1 1 0
XCV1997 flagellar motor switch protein FliG 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV1998 flagellar MS-ring protein 1* 1 1 1 1 1* 1 1 1 1 1 1 1 1 0
XCV1999 flagellar hook-basal body complex protein FliE 1* 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV2000 glycosyltransferase 1* 1 1 1 1* 1* 1 1 1 1 1 1 1* 0 0
XCV2001 hypothetical protein XCV2001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
XCV2002 hypothetical protein XCV2002 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0
XCV2003 3-deoxy-manno-octulosonate cytidylyltransferase 1* 0 1 0 0 0 1 0 1 0 0 0 0 0 0
XCV2004 hypothetical protein XCV2004 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0
XCV2005 hypothetical protein XCV2005 0 1* 1 0 0 0 1* 1* 1* 0 1* 1* 0 1* 0
XCV2006 hypothetical protein XCV2006 1* 1* 1 0 0 1* 1* 1* 1* 1* 1* 1* 1* 1* 0
XCV2007 Rieske 2Fe-2S family protein 1* 1* 1 0 0 1* 1* 1* 1* 1* 1* 1* 1* 1* 0
XCV2008 acetyltransferase 1* 1* 1 0 0 1* 1* 1* 1* 1* 1* 1 1* 1* 0
XCV2009 short chain dehydrogenase 1* 1* 1 0 0 1* 1* 1* 1* 1 1* 1 1* 0 0
XCV2010 short chain dehydrogenase 1 1* 1 0 0 1* 1* 1* 1* 1 1* 1 1* 1* 0
XCV2011 3-oxoacyl-ACP synthase 1 1 1 0 0 1 1* 1 1 1 1 1 1 0 0
XCV2012 acyl carrier protein 1 1 1 0 0 1 1 0 1 1 1 1 1 1 0
XCV2013 aminotransferase 1 1 1 0 1* 1 1 1 1 1 1 1 1 0 0
XCV2014 flagellar sigma-54 dependent transcriptional activator FleQ 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2015 two-component response regulator 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0
XCV2016 RNA polymerase sigma-54 factor 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2017 LuxR family two-component response regulator 1 1 1 0 1 1 1 1 1 1 1 1 1 0
XCV2018 hypothetical protein XCV2018 0 1 1 0 0 1 1 1 1 1 1 0 0 1* 0
XCV2019 hypothetical protein XCV2019 0 1 1 0 0 1 1 0 1 1 1 0 0 1* 0
XCV2020 flagellin-specific chaperone FliS 1* 1 1 0 1 1 1 1 1 1 1 0 1 1 0
XCV2021 flagellar capping protein 1* 1 1 0 1 1 1 1 1 1 1 1* 1 1* 0
XCV2022 flagellin 1* 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2023 flagellar hook-associated protein FlgL 1* 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2024 flagellar hook-associated protein FlgK 1* 1 1 0 1 1* 1 1 1 1 1 1 1 1* 0
XCV2025 flagellar rod assembly protein/muramidase FlgJ 1* 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2026 flagellar basal body P-ring protein 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2027 flagellar basal body L-ring protein 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0
XCV2028 flagellar basal body rod protein FlgG 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2029 flagellar basal body rod protein FlgF 1* 1 1 0 1 1* 1 1 1 1 1 1 1 0 0
XCV2030 flagellar hook protein FlgE 1* 1 1 0 1 1* 1 1 1 1 1 1 1 1 0
XCV2031 flagellar basal body rod modification protein 1* 1 1 0 1 1 1 1 1 1 1 1 1 0 0
XCV2032 flagellar basal body rod protein FlgC 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2033 flagellar basal-body rod protein FlgB 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0
XCV2034 chemotaxis signal transduction protein 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0
XCV2035 flagellar basal body P-ring biosynthesis protein FlgA 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0
XCV2036 negative regulator of flagellin synthesis 1* 1 1 1 1 1 1 1 1 1 1 1 1 1 0
XCV2037 hypothetical protein XCV2037 1* 1 1 1 1 1 1 1 1 1 1 1 1 0 0

CDS are considered as orthologs (1) on the basis of an identity of more than 80% on more than 80% of the length of the CDS. CDS are considered as putative orthologs (1*) when homology is lower or on a shorter length of the CDS and if the expected functional domains are identified. On other cases, no orthologs are recorded (0).

a X. translucens D61454.

b X. translucens pv. translucens DSM 18974.

c X. translucens pv. graminis ART-Xtg29.

Darrasse et al.

Darrasse et al. BMC Genomics 2013 14:761   doi:10.1186/1471-2164-14-761

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