Table 2

Chromosomal regions (1 Mb resolution) with highest interaction frequencies (> = 30% in control condition; T0)
Chromosome regions (interaction frequency > =30%) T0 ChIP-seq maximum read count T0 ChIP-seq binding sites T0 interaction frequency% T1 ChIP-seq maximum read count T1 ChIP-seq binding sites T1 interaction frequency%
chr3 62000001 63000000 6 0 31.4955 89 8 28.5573
chr3 63000001 64000000 16 5 32.1558 64 21 27.5008
chr3 64000001 65000000 8 8 44.5031 105 65 37.141
chr17 54000001 55000000 114 7 30.6042 308 46 25.7181
chr17 55000001 56000000 14 14 35.8864 95 62 31.9247
chr17 56000001 57000000 15 47 37.7022 110 132 32.4199
chr17 57000001 58000000 10 6 39.7161 169 36 34.2357
chr20 45000001 46000000 15 60 37.5041 244 148 31.4955
chr20 51000001 52000000 26 69 43.5787 325 182 36.4807
chr20 52000001 53000000 47 34 53.549 399 167 45.2955

The corresponding interaction frequency in E2-treated condition (T1) is also listed. ChIP-seq read count represents ERα binding intensity, and ChIP-seq binding sites represent the number of binding sites.

Wang et al.

Wang et al. BMC Genomics 2013 14:70   doi:10.1186/1471-2164-14-70

Open Data