Additional file 1: Figure S1.

Quality for each base in reads viewed by software FastQC. Figure S2. Base composition of reads as visualized by the software FastQC. Figure S3. Evaluation of false mapping reads using duplicated genes. Figure S4. Genome-wide assessment of mapping RNA-seq reads. Figure S5. Sequencing randomness assessment. Figure S6. Gene coverage statistics. Figure S7. Comparison of gene expression in two samples of root and leaf tissues in gene expression. Figure S8. RT-PCR validation of novel transcripts. Figure S9. Cumulative distribution of FPKM values of all and novel transcripts in each sample. Figure S10. Expression profile of B. rapa genome displayed in Integrative Genomics Viewer (IGV). Figure S11. Numbers for different types of dinucleotides at the splicing borders. Figure S12. Genes with multiple AS events.

Format: DOC Size: 3.3MB Download file

This file can be viewed with: Microsoft Word Viewer

Tong et al. BMC Genomics 2013 14:689   doi:10.1186/1471-2164-14-689