Table 1

P. micrantha chloroplast sequencing data statistics
PacBio RS Illumina HiSeq2000
Number of raw reads reads1 56,770 7,164,496 (paired reads)
Total nucelotides (raw data)1 223,483,907 1,421,726,349
Mean read length (raw data)1 3,937 99
Total nucleotides (error-corrected data) 54,492,250 n.a.
Mean read length (error-corrected data) 1,902 n.a.
Pre-assembly error-rate2 1.3% 0.117%
Ambiguous bases post-assembly3 0% 0.12%
Assembled genome coverage 100% 90.59%
Average depth of coverage 320× 9,111×
Number of contigs 1 7
Total genome coverage (bp) 154,959 148,776

Summary statistics for the assembly of the P. Micrantha chloroplast genome using PacBio RS and Illumina HiSeq2000 sequencing data.

1Trimmed Illumina reads.

2Error-corrected PacBio reads and raw Illumina reads.

3In comparison to the chloroplast consensus sequence.

Ferrarini et al.

Ferrarini et al. BMC Genomics 2013 14:670   doi:10.1186/1471-2164-14-670

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